Gene detail

Detailed information of XP_020624047.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_3172:221649...234367
NR annotation: XP_020624047.1, protein gar2-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110061556

ATGGCGAAGCATGTCACTTCAAAAAAGGATTCCAGTTCAGCTGATGATAAAACCATTTCAAGAAAACAAGTTGCCGAGAAGAAAACTAAGAAGGAAAAAATAAAACAGAATGGAAAATCTAAGGTCAAGCCTGCACTTGCTCCAAAAAAATCCAAACCAGGTCCAAAGAAACCTAAAAAACAGTCAAGCTCTTCATCAAGTGAGTCTGACTCTGATGAAGAAGAGGAAAAACCTGTCAAGACACTAAAGGCAGATGTGCTTGAACTCAAGGGACTGAAAAACAAACAGGATGATTCCTCAAGTGAAGAAGAGTCCTCTTCAAGTGATGATGAGAAAAAAGGGAAGCAACAAAAATCAAAAGCCAAACCAACTGGGACAGTGAAAGCTGAGGCATCTTCCTCTGAATCAAGCTCTGATGAAAAAGAGAAGAAGCCTCAAAAGTCAGCACCCTCTAAATCCCCTGCAACAAAAACTCAGTCCAAAGAAGGATCTTCTGAATCTAGCTCAGACTCTTCCGATGGAGAAGACAAAAAACCAAAAACAACAGTGCCAGTGAAAACAAGTAAACAGAAAGAAGCAGGAAAAGCTAAAGAAGCAACTTCTGAATCCAGTTCAGATACTTCTGATGAAGAAGAAAAACAACTAAAAACAGCAAAGAAAATGGAAACAAGTAAAAAAAAAGAAGTTAAAAAAAAAGAAGCAGCTTCTGACTCTAGCTCAGATTCTTCAGATGAAGAAGGAAAACCAAAAACAAAGAAAATGGAAACAAGTAAAACAAAAGAAGTTAAAACTAAAGAAGCAGCTTCTGACTCTAGCTCAGATTCTTCAGATGAAGAAGAAGAAAAACCAAAAACAAAGAAAATGGAAAAGAGTAAGACAAAAGAAGTTAAAACTAAAGAAGCAGCCTCTGACTCTAGCTCAGATTCCTCAGATGAAGAAGAAGAAAAACCAAAAACAACAAACAAAACGGAAACAAGTAAAACAAAAGAAGTTAAAACTAAAGAAGCATCCACTGACTCTAGCTCAGATTCTTCTGATGAAGAAGAAGAAAAACCAAAAACAACAAAGAAATTGGAAACAAGTAAAACAAAAGAAGTTAAAACTAAAGAAGCGTCTTCTGACTCTAGCTCAGATTCTTCTGATGAAGAAGAAGAAAAACCAAAAACAACAAAGAAATCGGAAACAAGGAAAGCAAAAGAAGTTAAATCTAAAGAAGCGTCTTCTGACTCTAGCTCGGATTCTTCTGACGAAGAAGAAGAAAAACCAAAAACAACAAAGAAAACGGAAACAAGTAAAACAAAAGAAGTTAAAACTAAAGAAGCATCTTCTGACTCTAGCTCAGATTCTTCTGATGAAGAAGATGAACAACCCTCAAAAGGAAAAGCAAAAGAAACAAATGATGAGCCTGATTCTGGGTCAGATTCTAGCAGTGAAGATGAAGAAGAATCACCCAAGTTAAATGGGGAAAATGGAACAGCAAAGGATTCCAGTAGTGAAGAATCAAGTTCAGATGATGAAGAGGTAAAGGCCAATAAGAAGCTTGTTAAAGGAAGCAAGAAACGGAAGAACAGTTCATCAGATGAGGAGGCAATCACAACAGCTAAGAAATCCAAGAAAAATAAAGAGTATTCGCAAGAAAGTGCAAATGGAGATGCTGGAAATGAAGAGGGGAAAGGTCAGAAGGCTGCAAAGAGAAAGGCAAATACAGAGAGTGAGGATTATGGAGGCAAGAAGTTGAAGCAAGATGACAATCCCAACGAAAATGTTTCTCTTTATGTCGGAAACTTGTCATATGGAACCACTGAAGAGAGCATTCAGGGTTTGTTTGAGGAAAATGGTTTAACTCCGACAAGTGTTAGACTAATAACAAAGAATGGAGAATCAAGAGGGTTTGGCTATGTAGACTTTGGCAGTCCAGTGGAAGTTCAGCAGGGACTTGAACTTGATGGCTCAGAACTTGATGGCAGGACACTGCGAATAAACATGGCAGAGGCAAGACCCTCCCCAAGTAATAGAGGGCAGGGGAAATCACCACGTGGAGGTGGATCTGGCAGGGGTCGTGGTAAAAGTACTCCATCAAACACCTTGATCTGCATCGGCTTATCATACAACACTGATAATGACTTACTGAGTGAAGCTTTTCCAAACTGCACTGGTGCACGAGTCATAACAGACAGAGACACGGGCAACCCAAGGGGTTTTGGATATGTTGAATTTGATAGTGTGGAGGATGCACAGTCTGCAATGGCTTCAATGGATGGAAAGGAGCTAGATGGTCGTTTTCTAAGACTCGATTTTGCTGAGCCACGGAATTCCACACCTGGCAGTGGAGGTGGTAGAGGTGGTGGTAGAGGAGGTGGCAGGGGAGGAGGTAGAGGTGGTTTTGGTGGTAGGGGAGGTGGTAGAGGTGGCTTTGGTGGCAGAGGAGGCTTTGGTGGAAGAGGCGGAAGACAAGGGCGTGGTGGTGGCAGAGGAGGGACCCCAGCAAGTGCAGCACGCAAAGGAAATATCCAAGAGTACAAGGGAACTAAAATTTCATTTGATGACTAG

Transcript

rna-XM_020768388.1

AGTAACCTTCCTTTCTCGTTAGACTCGCGTTTGTGTTCGCACGTGGAGTTAAAGAGTGAGGGTTAATTTCATCTGGAATTTGGATTTATTCGGTCAAAAAATGGCGAAGCATGTCACTTCAAAAAAGGATTCCAGTTCAGCTGATGATAAAACCATTTCAAGAAAACAAGTTGCCGAGAAGAAAActaagaaggaaaaaataaaacagaatggAAAATCTAAGGTCAAGCCTGCACTTGCTCCAAAAAAATCCAAACCAGGTCCAAAGAAACCTAAAAAACAGTCAAGCTCTTCATCAAGTGAGTCTGACTCtgatgaagaagaggaaaaacctGTCAAGACACTAAAGGCAGATGTGCTTGAACTCAAgggactgaaaaacaaacaggatGATTCCTCAAGTGAAGAAGAGTCCTCTTCAAGTGATGATGAGAAAAAAGGGAagcaacaaaaatcaaaagCCAAACCAACTGGGACAGTGAAAGCTGAGGCATCTTCCTCTGAATCAAGCTCTGATGAAAAAGAGAAGAAGCCTCAAAAGTCAGCACCCTCTAAATCCCCTGCAACAAAAACTCAGTCCAAAGAAGGATCTTCTGAATCTAGCTCAGACTCTTCCGATGGAGAagacaaaaaaccaaaaacaacagtGCCAGTGAAAACAAGTAAACAGAAAGAAGCAGGAAAAGCTAAAGAAGCAACTTCTGAATCCAGTTCAGATACTtctgatgaagaagaaaaacaactaaaaacagcaaagaaaatggaaacaagtaaaaaaaaagaagttaaaaaaaaagaagcagctTCTGACTCTAGCTCAGATTCTTCAGATGaagaaggaaaaccaaaaacaaagaaaatggaaacaagtaaaacaaaagaagttaaaactAAAGAAGCAGCTTCTGACTCTAGCTCAGATTCttcagatgaagaagaagaaaaaccaaaaacaaagaaaatggaaaagagtaagacaaaagaagttaaaactAAAGAAGCAGCCTCTGACTCTAGCTCAGATTCCtcagatgaagaagaagaaaaaccaaaaacaacaaacaaaacggaaacaagtaaaacaaaagaagttaaaactAAAGAAGCATCCACTGACTCTAGCTCAGATTCTtctgatgaagaagaagaaaaaccaaaaacaacaaagaaattggaaacaagtaaaacaaaagaagttaaaactAAAGAAGCGTCTTCTGACTCTAGCTCAGATTCTtctgatgaagaagaagaaaaaccaaaaacaacaaagaaatcggAAACAAGGAAAGCAAAAGAAGTTAAATCTAAAGAAGCGTCTTCTGACTCTAGCTCGGATTCTTctgacgaagaagaagaaaaaccaaaaacaacaaagaaaacggaaacaagtaaaacaaaagaagttaaaactAAAGAAGCATCTTCTGACTCTAGCTCAGATTCTTCtgatgaagaagatgaacaaCCCTcaaaaggaaaagcaaaagaaacaaatgatgaGCCTGATTCTGGGTCAGATTCTAGCagtgaagatgaagaagaatCACCCAAGTTAAATGGGGAAAATGGAACAGCAAAGGATTCCAGTAGTGAAGAATCAAGTTCAGATGATGAAGAGGTAAAGGCCAATAAGAAGCTTGTTAAAGGAAGCAAGAAACGGAAGAACAGTTCATCAGATGAGGAGGCAATCACAACAGCTAAGAAatccaagaaaaataaaGAGTATTCGCAAGAAAGTGCAAATGGAGATGCTGGAAATGAAGAGGGGAAAGGTCAGAAGGCTGCAAAGAGAAAGGCAAATACAGAGAGTGAGGATTATGGAGGCAAGAAGTTGAAGCAAGATGACAATCCCAACGAAAATGtttctctttATGTCGGAAACTTGTCATATGGAACCACTGAAGAGAGCATTCAGggtttgtttgaggaaaatggTTTAACTCCGACAAGTGTTAGACTAATAACAAAGAATGGAGAATCAAGAGGGTTTGGCTATGTAGACTTTGGCAGTCCAGTGGAAGTTCAGCAGGGACTTGAACTTGATGGCTCAGAACTTGATGGCAGGACACTGCGAATAAACATGGCAGAGGCAAGACCCTCCCCAAGTAATAGAGGGCAGGGGAAATCACCACGTGGAGGTGGATCTGGCAGGGGTCGTGGTAAAAGTACTCCATCAAACACCTTGATCTGCATCGGCTTATCATACAACACTGATAATGACTTACTGAGTGAAGCTTTTCCAAACTGCACTGGTGCACGAGTCATAACAGACAGAGACACGGGCAACCCAAGGGGttttggataTGTTGAATTTGATAGTGTGGAGGATGCACAGTCTGCAATGGCTTCAATGGATGGAAAGGAGCTAGATGGTCGTTTTCTAAGACTCGATTTTGCTGAGCCACGGAATTCCACACCTGGCAGTGGAGGTGGTAGAGGTGGTGGTAGAGGAGGTGGCAGGGGAGGAGGTAGAGGTGGTTTTGGTGGTAGGGGAGGTGGTAGAGGTGGCTTTGGTGGCAGAGGAGGCTTTGGTGGAAGAGGCGGAAGACAAGGGCGTGGTGGTGGCAGAGGAGGGACCCCAGCAAGTGCAGCACGCAAAGGAAATATCCAAGAGTACAAGGGAACTAAAATTTCATTTGATGACTAGTTAACTTCTAGTCatcaaaagtaactttttcgttcttcttgaaaattcttaaattattaTGAGCAAATCAATTCTTAAAGCAGTGATCTTAGAATCAACTTCAGTTTGTATATAGTTGAGAGTTTTTAATGTGTGTAGCTTGGCTTTTCTCTCGGACATTTTAGGAGACACCTGAATATAGTGGCTGCAGTAATGATACTGTCCTCATAAGATTGAAGTATAGTCTTCCTCAGACTAGTTAATAGTGCCTGCAACCACTGATCGTCAACTACATCCTTCTTTTAAATGTTTGCTTTGttgctttaaaatgttcaacatGAGATATTTGATTATGCATCTAGCAGCTGTAGTAAACAGATCTGAAATGAGCCAATATGGAATACAGTATAGAATAGGAATGTGTACTTTCAGATGACTGAAGTCTTTCTTACTGCTACTGTAAACCAAGacttttgttatttattctACAAATGTCATTGTTTTATACTGTTAATACCAGTAAAGCAATGATTGAAATGACTTGATTATGTGAAGGTTACTAACTTGTTTGATGCAAATCATCAATTAAAGCAATGCACAAAATGACTGCCCAGCTAAAGATATCATTGAAATGTACAATGTATAGATGGTGTGTGAAAATTtgcagcattaaatttgcttgtATTATTTTATCTTGAACAAATATGTAACATATTTAGCAATGTGTGAAATCTTACAATCAGATTCTAAACAAATCAGAACATATATCCTTTTAATCTTTTGGCTTGGCTTCATCATGATCtttacaaataaacaattttttgtca

Protein

Uniprot

Uniprot term	Description
P20397	Nucleolin OS=Xenopus laevis OX=8355 GN=ncl PE=2 SV=3
P15771	Nucleolin OS=Gallus gallus OX=9031 GN=NCL PE=1 SV=1
P19338	Nucleolin OS=Homo sapiens OX=9606 GN=NCL PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11294	NCL, NSR1; nucleolin	-	Chromosome and associated proteins	ko03036	deepkoala