Gene detail

Detailed information of XP_020624575.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_3244:175761...184307
NR annotation: XP_020624575.1, F-box/LRR-repeat protein 6-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020768916.1

gtgaagggcatggttttcaggcagtttttAATTAGTCTAGGTAGGGAATAGAAATCAAACAGTTTAGGTCTAGAATAGGGTCTAATTTACCGGGAgagtggccagtgtataaataacTTAGTTTAGAACAGGATTCTTTACCCAGGATTTTATAAAACAAATTCGAAACTCAGAAGTGAGAACTTCACGTAAACAGAATTAAAACTGCAtagaaaatagctagtctgggatagggtacgGGATTGTGGTGCCACCACCAAGCGGCTGATCATGCAttgtctagtatagggtaagggctccagtgtcccagcggcacatcccacGGAAAGATTTACAGAAtacccttccccccaccccctcctcccactAGACATAAATTTACGTTCTTTCATGTGTGCCTTGTCACAGGATGTCTAGAGTTTGTCGAAGCTGGAGGCAAGTCTCATCAGAACCAATTCTTTGGCGCGAAGTGAATTTATCGGCGATGAGTATCGAGTGCCCCAGATCAGCTAATGATTCTACAATCGAGAAGTTAGCCTGCTCAAGATTGAAAGCGGTTAAAGAACTAAGCCTTGATGGATGGAGTGAGCTTACAGATACAGGACTTAAGgCCGTTGGAAAGCACTGTCGCCAACTTCAGTCCATCGTTTTATCTCAGTGCGGAAGCTTGTCACCAAAAGGCATCACTTCTCTCGCTACCAAGTGCCGCCAGCTTAAGATGTTTGACGTTGCTATGACGAAGATTGACATCTCGTGTCTTCATCGCGTCACAAAGCGGCTCGGAAGCCAGCTTGAGGAACTCTGTTTGATGAATTGCAGTCGACTAGGTGGAGAACAAGTTCTTCCTATCATTCAGGAGAATTGTCCAAACTTGACAGCTCTGGATCTAACTAGTACCAATATTAGGAAACTGAACGTGGAGAAGTTACAGGCTGGTTGTCCGAAGCTTAAAGAACTCTTCGTCGCCAATCTACTGCTTCACTCGACTCCCATAAGCACTGAAGTGGAACAGAATGGTTTTCCACAACTGGAGACTCTTTGCTTGGCTTGTGGTTCCCTGGCTGGAGTCCCCAGAACTGATCGTTTTTTGTACAGAATTTTAAGGACGTCAGTAAACCTTAAGAAGTTAGACGTCAGAGGACTTCAACGAATCAGTCCTGAAGGAATTCAGAGGTTGCCGGCTACATCGCTTGAGGAGCTGTTTCTCTCAGACACTCGCGCCAATTTTGCCACGATGTCTGTTGTCATTGAACAGTGGCACCACAGTTTGGAGATTTTAGACATCTCGTCCAATAGTGGGGTGGGCGACGAATCCATGGAGCTGTTGAGGGACTTCGGAATGCCGAAGCTGTATAGTTTGGATCTTGGAAGCACCAATGTTACAGCTGAAGGCGTAAGGAAAGCTCTGAATGCATGCCCAAGACTCCAGCATTTGAATTTGACGTCTTGTCGTGGAGTCCCTCGAGGCTTAAAGCAGTGGCATGCCGGCGCCAAATTGAGAAATCTCATTGCTACGCTGGAGGAAATGGAGTCTGGAACGAGCAGGGAACAGCACGAAAGCGAGTAAAAATCACCATGCAGTTCGCTTGAGGAGTTTAACATTCCTGCAGCTCTGAGATCTAAACATGCAGGAAATCTATCGCTTCCATCAAACGCGATGATGGAAAATAGCGCGCACCTGAAGAAGTGGTTAAAAAGCAAGTATCCTGGTGGGGCTGACTTTGTCTACTTCTTTCACGTCACTTTTCACTCATTTTCCTAATCATTTTTATCTATCTGAATGTTTCTTCATTTCAGCCGCTATCGCTGCATATCTGTTCCCTAAGCTATTTAATCCGTGATACACTCTTCTTTACTTACTATACACCACATCTTAGCTTTCCTCACTTATTAAGTCCCCACCAGCCACACCCCGTGTTCGGCCGAGTATGTGCTCTCTTTACCACTTCTTATGAGCATGCTCATACATGATGCCCGGCGAGGAAGACGAGTTGCCAGTAACGCAGTCTTGAGAGAACTATTGTTTATGTGCATCCGCACCTTCATTTGGTTTTTGATTAAAGCCGGGATCCTCATTTTCGtctttttttcagcagttcATTCACTTACTCAAGAGAATTATGTTAACGTGTCTTGCTCTTCATCTATTCAATAAACAGTTTATGTAAAAGCAGCTTAAAACATGTAACTGACAAGACAAAGTGTCTGTTAACTTAGCGGAAATCTGCTATATCTGTACCTTTGGTGTGTTCAGGGCATTAAAGGGAGCCAGTTATTGATTAACAAGGCTTGACGTTTCTCAATTACATTGCATTCACATCAGTGAGCCCTCGAGGTGTATAACTCTCTCTATTAAAACTAATATCTTATCTCGTGCTTAGGTGAGACGAAACATCGTCAATTGAGGTTTAACTTTTACTGAATTGTTTTCTGATCATTACGGGAGCTGATTTTTACCACAAAGGATCGTAAAAGTTAACGAGGCTATTTTGTATGAAATCAATTTTGAGCTTTAAAAGGCTTTGTGGGTGGGTTATAAATCTAAGTGGTTTAGGCCAAGCTTCTGCCTTCAAAGGAATCAAAGTGATATCGACGAGACGCCTGACGAGACGCCGTTAGGTTTAGGGTCAAGTTTTTTTAGAGTGTACGGGCATAACTTAAAGTTTcaagagtaaaggaaaacattattttcaagtGATTTTGTATTATTGCTAAGAAATAAATACGAAACGCATACAAAACCATGATTTCAtacacaaaatgtaattttgttgaattctgcaaaccaaaaatgtcatgttttataggGGGTGGGTCATGTAATTTGCAACCTTTATTTAGGGGTGGTAACTCAGTTGTGTGCCAAATGGAAGGGGTGGGTCATGTGTTTTCTAaccaccacattttcaaatgctctGGCCCAGCCCCGCTGTACTTTTTGATCGGTCCCTTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan