Gene detail

Detailed information of XP_020625766.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_358:33668...37444
NR annotation: XP_020625766.1, spermatogenesis-associated protein 5-like protein 1 isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020770107.1

CGTAAATACGTGGAAGATGAACCATACTTGTTACAAGAAGTAcatatcagaaaaaaatatagttATTGTTGAGCCAGTGAATGCAAAAACCGTTATTGTGTCTTTATTTTTTCGCAAAGGATCTGAAGATTTTGATCTCAACTTGACTGAAGTTGCGCAAGAAATGAAGAGAGAAAGAGTTTCTGTCTATTTATTAAGAGGTTGCATCGTTATGCAGGGATGCTTTATTGAGCCGAAGGAATTTAGAAACAATCAGAGCTCATCTAAAGGAATGGCAAAGATTTTGATACTCTCCACAGAACCCTTGACCCAGTCCCTAAAGGATAACCCAGTGAAAGtcactgacaaaacaaaaattattgttcagTCAGTCAGGAGGAAATGTGAACTTGGAAACAAGAACAATGAGATCCTAGCAGGTCTTGATGATACAGTGAGAGAACTTCAAGAAGTGTTAAGCTATCCTTTTCAGTATCCAAAGTGCTTTAGTCATTTAAGACTTGAGTGCCCCAAGGGAATTTTACTGCAAGGAGCCCCAGGGGTTGGGAAGACTCACCTTGTTAAGAGTGTAACTTCACAGTGCAGTGCAAAGTTAATAACACTGGATGGCACACATGTGTTTGGGCCACATCCAGGAGAGAGTGAAgaaaatttgaggaaaactttTGAGATTGCAAGGAATGCTTCACAGCGTGGTCCATGTGTTTTATTCATTGATGAACTTGATGCTCTGTGTCCAAAGAGAGGAAGTAGTGGAAATGAACAAGAGGATAGAATTGTTGCCCAGCTTCTTACTCTTCTTGATGGTTTGGAATCTCGAGGTCAACTCGTCATCATTGGAGCAACAAACAGACCAAATGCTATTGACCCTGCACTTCGAAGGCTGGGCAGACTTGATAGAGAGGTTGTGATTGGAGTGCCAAATGCCATGTAGAGATTGTCTATGCTAAAAGCTCACACCCAATCCTTAAAATTGTTAGATGAGGTTGATCTAGCACATGTTGCTGAACTGATGTTAGGTTATGTTGGTGCTGATAAAGCCTCTTTATGCAGGGAAGCAGCATTTGTGGCCTTGAAAAGAATGATAAATCACAGCAACAATGGGAACCCCTACAGTATAAGTGTacaagaaattttgaaaggCAATGAAGGTAATGTAATTGAATTCTGGATCGGGGAGTGTGGATTCAAGTCTTAGCTGTGGTCATAGAATTGTGTACTTTAGCAAAACACTTTTCTCTTGTAGTACATCTCTTCAGCTAACTGAATTGCTGAGTTAGTGGGCGGGGTGGGGGGTGGGAGTAAACTGTGCTCTTGATTGGTTGAACAGTGATTCCCATAGTATTACTGGTAAGGAAATAATTTGGTAACAGGTCCAGCTAGAAGTGTAGGAATTAACAGAGAGTCGACTGTCTCCACAATGGCCAcattggggacagaggaaagtgacCATTGCGACCATTATGGACAGGTAGGCATGTAATATGACTACACCTGTTTTTCTAGGGGCTGCAACAAATAAGCGTTTgtaaatcaaaatgtatcacTACAGCAGACACTAGACAGAAAAAGAGACTAACAACACATAGAGATCAAGTTTCATGACCTTTTACATTAAAAAGTGGGTTTTTGTATTGACAGTTTTACTGGCCGTTGTCAAGAAGGTATTTTGACCTTTTGGGCAAGTTTTAGTGTCTGTTGCAATTGTGGAGTGGTGGTCGTTGTAgcgaggttaaaataagagtgaatgcaTGGATTGTCAGCTGGGACCAAAAAACGTGGCCCTTAtaaagaggtggccgttagtggaggttcgactgcattgttatattttaaaatgcagtGGTAAATGGTTAACTTTGTCATCCAAATCTGTTCCTGATAGATAACGTTGGTGAAATAACCATGGCAGATTTCCAGCTAGCACTGTGCCATATTCTGCCATCTATGTACCGAGGTTTGGAAGGAATGGTTGAATGGAATCCTGTGAGCTGGGAAGATATTGGGGGACTACAAAATGTGAAACAAGCTCTGAAGCAGGTGGGGAAGGATACGTCACTGGCTTGTGCGTTTTGCACACTTTCCAAAAAGCCTGcaacaagaattttttaatttcattacaTGGTcaagcagaaaaaaagaaaattaaacagcaTAGAAATATCGCCTTGACGTACACAAATAGTAATACAATTTATACCACGAAGTGTGCAAGGAGATGTAATAGTTTGAGATCGACACGCAAGGGTTAAAGATAATTTGTAACATCTCTTGATAGTGTACAATTAGCTGGCCTGTGTACA

Protein

Uniprot

Uniprot term	Description
Q0VA52	ATPase family gene 2 protein homolog B OS=Xenopus tropicalis OX=8364 GN=afg2b PE=2 SV=1
Q58556	Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1156 PE=3 SV=1
Q9BVQ7	ATPase family gene 2 protein homolog B OS=Homo sapiens OX=9606 GN=AFG2B PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050168	Family	AAA ATPase domain-containing protein	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26051	SPATA5L1; ribosome biogenesis protein SPATA5L1	EC:3.6.4.10	Ribosome biogenesis	ko03009	deepkoala