Gene detail

Detailed information of XP_020626245.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_412:385717...390028
NR annotation: XP_020626245.1, claudin domain-containing protein 2-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020770586.1

TATTTATGTTGTGACTTTTGGATGTGGTTATTCTTGTAAAATATAAGTTTATAGGCGTGATACAGCTTTGGCCTACCGCGGAGCTGTAAAGCGCTCTGTTGTTTAGAGCAGGCATAAGACTTACGTTCTCTGcatttcaaaatagaaaatcgATGTACACAGCGAACTTATCTCACGTTTTATTTCACTCGATTTCTCTTAGATAATTTGTAAAGGTTATGTAGTCACTGTAGTCAGTGAACCATCGCACCGCAAGTTCTAAAATCATACGTAAAATATTGTTACGGGTGAAGTGAAGCGAGCATAAATGGCAAGCATGCATTTCAATGAAGCCAGCAGCAAATTCCTCGCAAATTAATTGACACACCCAGCGACGCAGCAATATAGCGAAACTTTGAGAGTACGAAAGCCGCTAGAAAACAATGATCAAGGTGATAACAAGTTTTGTAAGCTGTTTAGCAGCAATTCTACTGGGAATTTTGGCACTCGCCACGGACTTTTGGCGAGTATGGTGGAAGGAAGATAAAGAAATTGAAGGAGTTCAATATCATCATGAAGGCTTGTTTCAAACTTGTTCTGAAACTACAATCAATGGCACTGTTCTGGCAGTTGACAGATGCACTGACTTGCACGAGTTAGGAAGACCAgATTGGAATGCAGCAACGATTGCCCTCATGATCATTGGCCTGATTTGccatttatttgcttttgtcTTTACCATTGTGACTACTGCATGTCGAAAAGGACATCCATTCCCCTCATTTTTTATTGGAGGACTTTTTGTTGCTGCAGCAATTGCGGTGATTATTGCCTTGCTGGTCTATACATTCCATAACTGGCAATCTGATGTGTTCTTCAGCTGGTCATACGGCGGGGGATGGTCTACAGTAGCGTTATCCATTATAGCATTTGTGCTAATAATGGCAGATCGCTGAGTATGTTGAGAGCCCACCTGACACACAGCAAAGGTCTCACCTGAAATGACTGCACTGGCTGGAAATAATTTATGTTAACATCACAAAGTTTTAGTCATAATTTACTTTGCAAATTTGTCAGTGGGCTCGATGATTGCAAACCATTAAGCCAAAACTAGTACAGATAGTTGTCCGAATTCTTCCAAATAACACTACAAGAAATGTAGAGtctagtaaggagaatttgtatgTAGACATAAGGGCTTAGCAGGCCAAGACATCGCAGTTTCTATTGTTAATTGAGCTTTTTTTGTTGAGAGGTCTGCGTGACTTTTATCAGCGCTCAAAATATAGCATTTTAATGGAATGTTATCATTGTAGCTGAGTTAAGTTGACAAGTTAGTTGTAATGCTTTTAAACATTcaagttttggtttctttaCAAGTGGTTTATATTTGTCCTTGGTTTAAgtttttttaaatcagtttgGCTTTTAGTGACCATTGTCTTGTATTAATTTAACCATGATGTGATACAAGGaagaataaaaatcaaactggtttatAATTTCACACTAAAAGAAATCGCATGTTGACAACACAGGAAAATCTGAATATTGACTGtaggaagtttttttttgtttgttttttaccagaacattgtatttcttttatttgtttcccaGTGTACACAGGTATTTAAGTTAACACCCATATTTTCTCAAGTCTGTAAATTTTTCTAGGGTTTACCTTTTGTTGTTATCAGAGGAAGTAACTGTTATTTACTACTTGAGCGTCActgtaaaacaattttcttgctATTTGAAGGATTTTAAAAGACAGAAACAGTTCATGTTTCTATTAGAGTAGAATTTGTGAACATAAGAAACCTGTACTTGTAAGTATTTCACAAGTATTTATTTTATAGATAGAACTTGCCTTGTTGTTCCAcagagttttgaaaattgaacttgtATGACGCACTTCAGGATATTCAATGTAATATGCGCATGTAGTGAATTTTGCGactgtaattaattttcattagTAAAGCTGCATTATAATGTAGCTACTTTGCAATAAAATGTTCAATGCAGTTC

Protein

Uniprot

Uniprot term	Description
E9QHT9	p53 apoptosis effector related to PMP-22 OS=Danio rerio OX=7955 GN=perp PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00822	PMP22_Claudin	PMP-22/EMP/MP20/Claudin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050579	Family	Peripheral Myelin Protein 22/Epithelial Membrane Protein	Interproscan
IPR004031	Family	PMP-22/EMP/MP20/Claudin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10671	EPITHELIAL MEMBRANE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26255	EMP1; epithelial membrane protein 1	-	Focal adhesion	ko04510	deepkoala