Gene detail

Detailed information of XP_020626546.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_440:1438953...1443031
NR annotation: XP_020626546.1, 5-hydroxytryptamine receptor 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020770887.1

cctTAACAGTTATTTTTTGATAGCTTATGTTTACAAGCTTTTATCACTATAGCAAATTGTTATTATCTTCTATGCATGTATACATCAAAAATTGAACAGATTAACGAGCTGGAGTGCTGCAGTTATGGCAATGTAGATTCTGTTCAGTACTAGATTGTTTGATAACGAACTGCACAATCTATGTCGACGTTAAGTTGAACTGAAAAGTAAAGCTCCCAATAAAACAGTATTTATTCATCTTTTAGCGCATAGCTCggtaaccaaaaaaaaagaaagtcttatcacagaaaagaaaacaacgaaaagAATAAACATGGCGGtttctttgctttaatttgtgaAAAGGAAACAGTTCTAAGAGGTAAGCTAATGAAACTAAGGCAACTTAAATTGAAAACCTGTCAAACTAACGcgtcagccaatcacagtggaGTTATTTAGAATTCCATTTGGAAAGCATTGAATTAGAAGGTCGAATTTTAATTACgatatttatgtttttgaaaCAGAGCAATATTACTCGACATCGAAATAATTTTGGCGATGAAGTGCAGTTTTCGAGGCGACTGTGAGCGCGGTATTTGCTTTAAACGTTCGTTGGCTTAATGACAACTGTTTCTgaagtgaaacacttttcaTCGACTTTTAGCAACAAGACTACTGAGTTGTCAACAGAGGAATCGCTTTCCTCAAGCAACCATTCTGGAATTGCAATGCAAGCTGTGTTTGGAGGAATCGCACTTCTCTCGTTTCTTGGTAACTTTTTATTCTGTGTGGTTCTTCTAAGAAAGAGATATCTGCTGAAAAAACCTTATAACATTCTACTCCTTGTGTTGGCTGTTACCGACATGCTAACAGGTGCTGTTGTAATGATTACACCTGGTTTTATCGTACCAGTAAATAAATTTCCTTATTCCAGGGGTACAGCCGGCCTATTGTTCTGTCATCTAATTGACACCAGGTTCCTAATCTTTGTGATGGGCAAGGCTTCGGTCTTACTCGTGATGTGCCTGGCAATTGAACGCTGGTTCGCCTCCGTCAAACCTCTGGAGTACAGAATCAGATTTACCAGTAAACGTCTTGCTGTTTACATTATAAGTATTTGGATTTCAACCTGCGTCTTCCAATTGTATCGTCTTTTTCGCAAAATACCAGGAGAAGATGGCTGTCAATGGGCAAAGAATTCATTTGGTCCGCGCAGCCTCAAGGCACTCATAATATCATATGTGTTTGTGACTTTCATATTGCCGAACATTATAACGTGGGCCTCCTTCCTCcatatttggttgagtgtaaGAAAATCACCCGCAATGAATACGGCCAGCGGTAATCAAGCAAGAAGTAGGCTTTTACGCATGTGTGTTTTGACAGCGTTGTTCTTGACACTGTGTTGGTTTCCTGATCAGCTGAACTATGTTCTTAGTTTATTTGATGTCACCTCTCTGGCGAGTCCCATAAGTGATTATTTCCTTGTGCTAGCTTTGTCCAACTCTTGCGTAAATCCGTTGATTTACTGCTTTACAAACAAGGCTTTTCGCAAAGAATTTCGAAGTTTATTTACTTTCAGAGTTTTTAGCCGATCGGGATTTTGCCTGCCATTGAAAAAGTCTGCTTACTGTTTAAAGGACATGAAAGGAACAGAAGATTTTAAAGTGACTTTTGATAACCCTGTTGAATTATCTCAATACAAATTGTacatttaattgaattttgtcCTCGGTTTGAACAACATTCGCAtcaaatatttacttttatcagGTTTGTCTAAAATCAATTCTTACTACATTACCACCCTTCATTTGTTAATTATCATCGCTAAATACCATTTGGTCGATCGTTTATTGCATGAACCTACAATCGGCGACAAAAATGTTGACACGTTCACCTTTTTAACGCCCTATTTCCTCACTGTGGTCCCTTTTTGCCCTCCTAGCTTGTCCTTTCAACCACCTTCCCCCACCAAACAATGTTGTGTGGCAATTGCTGTGATCCTGAGCTACAAACAAGCAACGTTGAATGGGGGTGCGGGGTGTTTTACACGGTATATTGCACGGTAAAAAGACTGGTGTTATTTGGTGCGCTTAAAGTACTTTTGAAAGACAATGTGTCAACTAATTATGTCGCCGATTGTAGTTTAATGAATGGACTTTGattaatttcaaagaaaaagcgCAGTATAagtattaaatattattatcataatggTTACCACCAGTCTCTGACGTTCGGTGGCTGCGGAGCATCTGGACTAGTAACCAGGAGGTCTTAGGTTCGTTAATTTCCTACTTTGAGAACTCGGAATTCTCCTTTCTGGTACACCACCTGTACCACCAAAAATCTCATCTCCAGAGCCAGCGAATTTCCGGTCAGCGGTGACTTAACGCGCGGCACTTTTAGCGAAATCAAAAACAGGAACCAGAAaatcctgggccgggttgttcaaagtccgatGAAGCTAaaccaggatt

Protein

Uniprot

Uniprot term	Description
P97288	5-hydroxytryptamine receptor 4 OS=Mus musculus OX=10090 GN=Htr4 PE=1 SV=3
O70528	5-hydroxytryptamine receptor 4 OS=Cavia porcellus OX=10141 GN=HTR4 PE=2 SV=1
Q62758	5-hydroxytryptamine receptor 4 OS=Rattus norvegicus OX=10116 GN=Htr4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45698	TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan