Gene detail

Detailed information of XP_020626567.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_440:607125...624226
NR annotation: XP_020626567.1, endochitinase A1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020770908.1

CTGTGGTATacggattcactctagagaaactagtCCTACACGTTGTGtggccatattggtttattgttcggtaagagactggacacgattttgccACGTCATCGGCGTCCACACGTTATCAGATTcgttgcagattttttttttccactctggagagcggatttAAAAATATTCGGATTCGCTGCCAAAGTCGCCGggtgcgtgtggacggaagccgtatccggaaagaaaaagttgcggattcaaaaatatccgcaaacgtgtggacggggccttaaacTGATTTCCTTTTTGTGAGTAAATAACTGAACAGAATAACACATAGAACATAGGAGGGTTTATAAAAACGTTTTATGACAGGATATGAAAACTAAGCCAAATTTTGGTGGATTCATGCTATGGGATGCCGCCTGGGATCAACAAAATGTCATCGAAGGCAAGGTATATAGTGACCACATCGCAGACATTATGAGCAGGAGTGGGGGGGCCTCAGGGCCAACCACAGCTCCAGGCACCGGAGCTGCCTCCACAGCGGGTGGTTCAACACCAAGTGGGTCGACTCCAAGTGGATCGACACCAGGGGGCTCAACGCCTACTCCACCCAGTCCTGGAGGAGGAATTAAACGGCTGATTGTATACACGCACGCAAGGACTGACACCATTTGCCagcgaaacaaacaaaaacgtttaTACTCTCTTGAGAATTTTACATGTTCAGAAATTAGTGTTTGCAGTCAAACAAGGGTTGACAGCTCCCATAAAATCTTAAGTTTTTTACTGAATTTTCTCTGGTCTTTACCGAGTTTGTCAATTTCCATCACAGATCCGATGCCCGAGGTGAATTTTTCTCGCCATCGCTGGGATCATGCCTCATCCGCGCACCCAAACCCTTACAAGTGTCAAAAAATCGAAGAAGGCAGTTTGGCTTGCCAGAAAGCAGGAAAGAAAGTTCTCATCTCGCTTGGAGGAGGCACAGGAAAAAACGACCTTAAGGACGATCAAGCCAAAGTTCTTGCTAAAAATCTGCGGGATTTGTTTCTTGGAGGAGAGGGAAGACCTGGTATGCGACCATTTGGAAAGTTTGGCAAGCATCTTCTTGTCGCTTACTGGGGTCAGAACAGTTCAGGAAGGAAATTTCCCCAGAATCCCGAGAAAGATCTCAAGGAAGTCTGTGCAAAGAGAAAATACGACATTATAGTGATTGGATTTGTGGTGACTTTTTTTGACAAGGACAATAAAGATCAGATGCCCGGAGTGAATTTTTCTCTCCATTGCTGGGATCCTGTCTCACCCGCGCACCCAAACCTTTACAAGTGTCCAAAAATCGAAGAAGGCATTTTGGCTTGCcaaaaagcaggaaagaaagtTCTTATCTCGCTTGGAGGAGCCACTGGAAACAACGACCTTAAGGACGATCAAGCCAAAGTTCTTGCTAAAAATCTGTGGGATTTGTTTCTTGGAGGAGAGGGAAGACCTGACATTCGACCATTTGGAAGTGCAATCCTTGACGGCGTCGACTTGGACATTGAAGACCACAAATCAGGTGGCTACGCTCAGCTTGTCAAAAGTCTNCGAGAGCTGGAAAAAACAGCAGGAGCCAAAACGTACCTCATTACAGGGGCTCCTCAGTGTCCGTTCCCTGATGCCTCTCCGGGCCCCAAACCGGGCACTGCCTTGGGTGACCAGGGCGGCGAGTTTGATCAAGAAGGCTTTGCAATTGTCCTCAAGAACAGGAAAAGATCTGTGGAAGGAGGGCCCAAGATATTCGTTGGTATGCCGTCAGCTCCCGATGGCGCCAATGAACCCGAGCACTACAGGAAACCCGAGGAAGCGGCGAAGATTTATGAAGATCTGAAAGCCAAGCCAAATTTCGGTGGATTTATGTTATGGGATGCCGCCTGGGATCAACAAAATGTCATCGAAGGCAAGGTGTACAGTGACCACATCGCAGACATTATGAGCCGGAGTGGGGGGCCAAGCACAACTCTAGGCACCGGAACTGCCTCCACACCGGGTGGTTTAACACCAGTTGGACCGACCCCAAGTGGGTCGACTCCAAGTGGATCGACACCAGGGGGCTCAACGCCTACTCCACCCAGTCCTGGAGGAGGTGGAGGTGCTGATTTCTGCAAAGGAAAAGAGGATGGAGATTGCGCAGATCCTGATAACCCATCAGGATACATACCTGTTCTGGAGGGATAGCTTCCAAAAGACCTT

Protein

Uniprot

Uniprot term	Description
P29029	Endochitinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CTS1 PE=1 SV=2
Q873Y0	Endochitinase A1 OS=Aspergillus fumigatus OX=746128 GN=chiA1 PE=1 SV=1
A2QUQ2	Endochitinase A OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=ctcA PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00704	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR001223	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR050542	Family	Glycosyl Hydrolase 18 Family Chitinases	Interproscan
IPR001579	Active_site	Glycosyl hydrolases family 18 (GH18) active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45708	ENDOCHITINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004568	Molecular Function	chitinase activity	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01183	E3.2.1.14; chitinase	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala