Gene detail

Detailed information of XP_020626964.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_449:248296...261714
NR annotation: XP_020626964.1, LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 52 homolog [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020771305.1

CAATCTTAGTGGTATTTCCTTCTGCGCCTCAGCTAGACAGTCAGCGGTTGCAGCAAGAAGAAAGACATTCCATGTCATAGTACATGAGCTACTTATTGCCGAGCAAGataacaaagatggcggacggcGATCAGGGAAATGCGCAAAACCCGACCGACCCAGAGACAAACGGAGGTGATTCTAATGACGTCGAAGAAGCAGATGAGGATTTGCAGGTTGATCTTGATCTAGGTGAATTAGATCTCACTTCTCaagatgaatttattttggaCGAAGTAGATGTACATATACAAGAAAATTTGGAGGATGAATTGGTAAAAGAAGCTCTAGAAAAAGGAGTAGACCTAAGGCAGTACTCAAGGCAAATTGAAGGCGACTTACATGAAGTGGAAAATGCATCAATTCTGGACTATATCAAAGAGAGTGAAAATATTGCAAGTCTCCACAACCAGATTGCCTCCTGTGACACTATTCTTGAGGCAAGTTGTTTTTTAACCAATTTAAATTATCAGCTACCGCTCATCATAACAAAACTAGTCAAAAGGCAAGGAATAAACTATTCTAAACTGATTAAATTTCGAAAATCTTACAAATTAGCGCTGAGCGTCTTTTAattgaaattgtcttttttttcccgGTACCTTAGGCACATCTGTGAAACGCCAGTGACAGAACAGACATTCATAGAACAGCTGCACGAGTTGCATCACAAGATCGACTTTGCTAAAGAGCAGTCGTTTAAAGGGGCTCTGTCTGTCAATGATGTCGGAGATACGTTAGAAAAGCTGAAAGTCAAGgctGTACAGAGGATCAGAGACTATGTCCTACAGAGAATTTATCAGTTTCGTCGCCCAATGACCAATTATCAGATTCCGCAGAATGCCTTGCTCAAGTTTAGGTATTTTAATGAATTTCTAATGGCCCATCATCGTCAGGTTGCTAGAGAAATCAAAGATGAATACATCGACACAATGAGCAAGATTTATTTCTCCTATTTTAAAACGTACATCTCCAAGCTTCTCAAGCTACAGTATGAAGAGCTGGCGGATAGAGACGACTTAATGGGAATAGAGGACAACGCGAAGAGAGGTATCTTCTCTGGAAAAGTTTCCTTGAAAAACCGTTCGACAATTTTTACACTGGGAAGCCGTGGCAATGTTCTAACATCTGAGTTAGAAGAACCCGTCATTGTCCCTCATGCGGCACAAAAAAAGTACTCATTCGAGAGTCTGTTTCGCAGTATGCACTTCACATTATTGGATAATAGCTGTAGAGAATACTTATTTTTAGCTGATTTTTTCATGGTTGAAAAGAACGCTAAGGATCTGTTTACAGCAGTGTTCGGCAAAACACTGTCGTTATTTCTGAAACAAATGGACGCGTATCTTGAAAGTTGTTTTGATGCCATTGGAATCTTCTTGTGTATTCACATTGTTCATCGGTACAGAATACTAATGCACAAGAGAAGTGTTCCTGTACTGGACAAATACTGGGATACAGTGTTGGAATTGTCATGGCCTCGGTTCACGTATGTAGTGGAGTTAAATGTTGATAGTGTTCGGAGCACAGACCCTAAGAAATTTGGAGTTATTGATATAAGACCTCATTATGTAAGTACGAACTCCTTTTTATTTGGCATTTTTGATCACTTGCTTCGTTAATAAAGATGCTTGTCAAACTTGGTTTGTTTTCCCAAAGTCAATCGCGATTATAGCCTTGAGAGTTGTTCCTACTGAATTCAAATTAACTATTAATGTCAACTTATAGACACACGTACACATTGTTTACCTATTTTTGCTGTTCTCAACACCGAGCGTTCAAGAGACGACTAAAATGGTTATGTATATTAAGTTTTAATCATCGTTAAACATATGGGGATACTTTTTGAGGTTTTAATGTCATTTTAGGTCATAACTATATAACTAACGTTTCGATCCTTAACCCCCTTCATCAGAGATTATTCAGTCTATGGAAGTGAGGTGTGAAGTGTCACGGGCGGAAATAAGGCGGCCATGaaaaataaacggcacgcaatgcatgcagaagagatgacgtttaaaaattgttcctagaagattggaacataagc

Protein

Uniprot

Uniprot term	Description
Q8N1B4	Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens OX=9606 GN=VPS52 PE=1 SV=1
O55166	Vacuolar protein sorting-associated protein 52 homolog OS=Rattus norvegicus OX=10116 GN=Vps52 PE=1 SV=2
Q8C754	Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus OX=10090 GN=Vps52 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04129	Vps52_CC	Vps52/Sac2 family, coiled-coil	Repeat	Interproscan
PF20655	Vps52_C	Vps52, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048319	Domain	Vps52, coiled-coil domain	Interproscan
IPR048361	Domain	Vps52, C-terminal	Interproscan
IPR007258	Family	Vps52	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14190	SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000938	Cellular Component	GARP complex	Interproscan
GO:0006896	Biological Process	Golgi to vacuole transport	Interproscan
GO:0007041	Biological Process	lysosomal transport	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16569	TUBGCP2, GCP2; gamma-tubulin complex component 2	-	Exosome	ko04147	deepkoala