Gene detail

Detailed information of XP_020627032.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_449:456052...466100
NR annotation: XP_020627032.1, low-density lipoprotein receptor-related protein 5-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020771373.1

GAAAGCCCTGGAGGTCCTGGAGACAAAGCTGCCACTTGAGAACGACGCGTCCATTAGGTGGAAAacgttaattttatttaaacttgTCACGGTCTTACATGCTTCGATATACCGACTCATGTGTTAAAACAAATTGAGCTACACTTGAATTCTGTCTACCCGTTACACAGTACGAAGTTGCAGTTCAAGAAAGGCTTTGAATTCGAGTACAACTTCAGTTCAGACCTCGTGCGTAAGTCTCCTATTTAACCGGTCAGCGGCAACAGTGAAGAGTGACTGTGAAAGTGTGAAGGCTATGGGAAGGAAACTGGAATGAACCTCGCTCAATCTTGTAATTCTTTTTACTGTACCCCCATTTTCTTACTATTTGTGCCACAGTAACGGATAAGAATAATACAAGagtgatttttttcattgtaacaTCCTTTAGTAAGATAAGGTCTCATATTTGGATCAAGTTTTTAAGAACTGATTTTTATTGAATTTCACTCTTAGACCGAAGTTTTGGTCAAATTTTGCCGGActgtgaaaaagaaattttcccCGCCATCCCCTCCCCCTTTGCCCGTTATCTTCACTCACTCCTCATCTTCCCCTTCTTTTGGACATCGCTGGATCCGCCAGTGTCATGTTCTATAACATTTTTAGCGTCGAATTTTTATCGTTGAACTACTCCACGACAAGTGTTTGGACGCTATGCTATCGCTCATGTGCTGCGCTGTATGATAATAAGATGTATAAGTATGGGCTCCTGCTCATGGCAACGCCATTATCACgtcattcaaaattaattagTCTTCCGTGTTCGATGAGGACTTAAATAGCGAAGTGCATGGTTCCGCATGGCGGTCGAATATTGCCACTGTTCAGCCGCTATAATGCAACAAACTGGTGCCCGTGAATGTTGTAGTGCATACAGtctgctTTACAGGTGAGGAATTCCGCAGCACTgaagttcaaaatggcgggtgAAGCAGCTTACTTCTTTGTGATCCTACAGTTATGGTTTCTAGTTAATGTCATCGTCCAAGCATGTGACCCTCCATGTTTGTACTTTAGCGCTGGTCGAGTCATAAAGTCGATTGAACTGTCCTCtaacaaaatttcttcaaacGTAACTGAACTGCAGGCCCATGATGGCCGGGTCCTTGCCGTAGCAGTGGATATGGAAGAAAAAACCCTCTACTTTAGTAACCAGGTTAGCAGGACTATCAAGCGGATTGATCTGAAGTCAAGCAAAATCGAAGACGTAGCAAGCGAAGTTGGTTACTGTGAAGATATAGCTATAGACTGGGTAAACAAGTACATTTATTGGACGGATAACAACAACGGCAGGATAGAAATGTCACGTGGTAACGGAAGTGAcagaaaagtgttttttgaCAGAGATGTTCAGAATCCTAGAGGAATCGCTGTGGATCCAGTCCATGGGTAAGGATTTTGTAATTATTGAATTGTTATCGGCGACTAGAACAGTAGCAAGTCCGGAAATCAGTTTCCTGCAGGGATACGAGAATTTCATTGATTGTGCTTGATTTTAACGCATTactttgtgatagaatgctgtACCCTCCACTTCTCCCCCATCGACATATAGAGGCTAACCCTTTGTGTATTGAGTACTCTGTATTATTTGCTTATTATTTGCCGTTTTACTGGAATTAACGTTCAAAGGGCTTGCCAGATCTATGGACGCTTTTCTAACTGGGTATTTTTGTGAACTGATCAGAATTTGAAGCAAATACAAGCGTATATCAGAAAATGACCTGCTTAGGTTACTCTTTTTAGTCAAGAGCATCAGTAGACACCAGGCGAAATGTAGAGGATACTCCCCAAGAAAAAGCCTGACGAACCCAATAAACTTGAAATAAGGCTCTGCTTCAGTTTAGAAATAGACCAACTAGTAAGCAAAGAAGGAAGAATTAGTGATTTGCATGGGCGTCCAATAATAATGTCTATAAGTGGTCATAAGTAAGCAGATTGCTTTTCTACATTCACACTGATTCCTGCCAGAATCTAACAGCGTGCTATTAATCTCTTTTCAGGAGGGGTACGGGGGAAGGAGGGCTTTTTGCAGTTTTAACCaaatcatttaaatttatttaggTATATGTTCTGGACAGATTATGGAGATAAACCCAAAATAGAAAGAGCTACCTTAGCAGGACAAGAAAGGACTacaattatttcaaatac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan