Gene detail

Detailed information of XP_020627775.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_517:1223418...1229480
NR annotation: XP_020627775.1, tyrosine-protein kinase SYK-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020772116.1

ACCTAGGACATGACGTCAACCCATTACTTTTGAGATTTTTGAACCATGAAGTTAATTCAGAAAAAGTGGAAAACTCGATGTGTACTACACATGTCTACATGTTGTTTTCTTCCATGTTTGATGGGACGATAAGATGCTGGTCTGCTTATAGACGTACCCACGTTTGATCTTTCAATTCTTGTTAGTAAAAGTACttggtgattttcttttttagataTACATTTTCGTCAAATTGTGAAAAGCCATTTCAACTAGTTTTAAGATAAATTCCGTGAAATGTATTCAGAGGTACATCGAGCGAATGAAAATATTACCAGCCTTTTTTGATCCCATCTgtcatttacaatatttgttccctGCGATGTCAGTCTAATTTGCGCGCCATGACTTTTTTCAGGACATTTTGCAAATACCACAACTTCTTGAGTTTTGCATGCAGATCTGCAAAGGAATGCGATACCTGGAACAACAATCATTACTGCATAAAGACCTCGCTGCAAGGAACATCCTCGTAATGAGGGAGGACCTTGTAAAGATTAGCGACTTTGGCTTGTCAAGGTTACAGGATTACTACAAACTTCAGGAGTCCAGTAAAATACCTGTGAAGTGGTACGCCTTGGAGAGCTTGCTTAAGCAACGCTTCACCCCCAAAAGTGACGTGTGGAGCTTTGGGGTAACTATGTGGGAGATTTTTACCTTCGGAGACAAGCCATATGGTGACATGCAAAATATTGAGCTTCCTGGATTTCTTGAGGCGGGACAGCGACTCGCCTGCCCAGTAGGGTGCCCACAGAAGGTGTATGACGTCATGTACAATTGTTGGCTTAAAGAGGCCTTAAAACGGCCAACATTTTACTTGATCGAAACCGACTATTTGACAGCGTTGCTGAAAGAATATCCTGTTTCTggctaatgaaagaaaatcttAATCTTAACGCAGGAGTTGTTTATGCATGGGAAATCCGTTACTCTTTAAGTAACAAGTGtgatattgttatttctttaacaAGTTATTACCATCAAAGTATAGTTTGCAGATCAAGAGCACTGGATTAAAATCCTGGTGGAAGTTATTGTACTCTACTTGCTGGCATTCCCCATCTACGTATATAAACGGGTACTAAAACAAACTTCCTCTCAGGGCAACCTTAATAAAATGCTGAGAGGTAAGCCTTGGGTGGACTAGCTTCCCTGCTAGGGGAGGGggagtagcatcccatccaggtgggagtAGCATCTCAGCTgggggagtagcaatactctTAGTCGACTCACGCGCAAATTGGGTGACACAGACCACTGTTCGCATGGGTAGACTCGCGTTAATCTGCTATAGATGAAGATTCTGGCTATTTCAGCCCCCTCCCACTAACTCCTACTCTTAAACTGCTTCTCCCTCGCTGTGTTACCTTCACAGGACCGTCTAGACCGAACACTTCTAAAGCTCCTCCACCTTCCCTGTTAGCATTAAATTGTCACGAATAAGACCAGCATTAGGGTGCTTAAAGGTTGGCCTGCTATACACCCACTGATAGTTCCGTATGTCGCAAAGTTTACCGGTCTATTTCTCAACTAGTGAAATAACTAGTTCAACAGGGTTTGTGTATAAATTGTATCCAGCGGTTAATTTTATCCCAGACTGTTACGCCATTCAGAAATAGCAAGGCTATTGCTCTTAGTCTGTAGTTTACTTAGGGTAAATTTTCGTCTTGAAGGCGTTTCGAATACTTGTTGTTAGTTCGTAAGGTCTGTCGTGTCTGTAGCTTTTCTGTAGGTACTTTAAGAATGTTCATTAGGTTAGGAATGTAACATAATGtagaaaagaaactgaacagTCAATGCAGTTGAATGTGACAATGCAAGTATTAAATGTGTGAAGCCGGAATCCAACTAGAACGACAGTCGGCGAGAGTTGAAGAAAGTTCAAAAACGTATCTCTCATTTTACGGCTAACTCATGTCCATTTATCGAATTGGAAGCCGCTGAAATTTGCTGGAGATTTGACGCAAGATTTCTCTCGTTTGACATGAAGGTAATGTTAAGTCTCGTATGCTGTTAGCTCAATTGACTGCAAACTGATGATAGTCGATAActgttgaagaaattaaaactctCGTCCAACACTCGTTAGCTgtcgtttttgttgttcataCAAAGAGTTCAAGATTAAGATTATGTAACTATAGGAGTCGTAGTTTTTAGTCAAGTACAAGACTGAGTGTCTTCAAAGTGTGTTGTTTGGTAGAAATGACCCTAATATGGACGGTCAAAGTAGCCACTGAAAATATTAAACGGTCATTAATAGCCCGAAAAAATTCTATCTTTTTGCGGTAAGCTGCTTGTACTAAGTACCAAGCTTTGTCATTAGTTGTTTATCGTCGtgaaaagtttacattttttttattccagaGTATATCTGAAACAAAGTGAGAAAGCACGGCAAGAAAATAGAGAACGATTGCCGTGCTGTAAGTTATTAAAGAAGGTTATTAAAGAAGGTTattaagagcggttttcatttgattgtGGAAAAATAATTAGTTTTGCGTAACtacgctacgcgattggcttaacAAGCtggcgccactttttcatccaattagaaGTGAcgaaaaccaatcgtgactcgctcgctcacgttttcccgctcttcgcgtcagctacatgtaattacttcgagttttgattggttcattggaatGTCTGtctcctttgtgattggctagagtgattactttggtttttgtttcacgacactcaattgaaagccGCTCTTTTCGAGTTGTTCTTCACACTCGTAGGAAGCTAACGCtccatgaaattaaaatttaaaaagaagtcgtattgaaattaatatttgccTTTTGATTTGGGTGATGCATCAATTTTCAGGTTCTTCCTTATCGCACATGTCGTCGTTATCTTGCTCTGCTTAGCAGAAAGATCCACAAATGgtgttttctttagttatgGTAAGCGTTAACTTCCTTTACCAAAAAATATCAGTTTCGTGGGACATGTTTGTATAAATGACAACCGTTAATTTACTGTCATTATGCATTCTAATTTAGTAAGGGCTATGTAAAGCCCCTAAACAACCCGGCCTTGTAGTCTAGAACAGGTGCACCAATGTCATCTCAAAGATGTCTGTTGTGTTACTTAGTGTTAGTCTACTCAGGTCTCACTCTGGTTGACGCTTGTCTGAGGGAGATCTGGGTTGGAGACTAACTTAGTGTAAATGTTAGTCTTTGTGCTGCTATGACAATAAAACATCAAACTCGCATCAAA

Protein

Uniprot

Uniprot term	Description
Q64725	Tyrosine-protein kinase SYK OS=Rattus norvegicus OX=10116 GN=Syk PE=1 SV=1
P48025	Tyrosine-protein kinase SYK OS=Mus musculus OX=10090 GN=Syk PE=1 SV=2
P43405	Tyrosine-protein kinase SYK OS=Homo sapiens OX=9606 GN=SYK PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR050122	Family	Receptor Tyrosine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0004714	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007169	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0009925	Cellular Component	basal plasma membrane	Interproscan
GO:0022008	Biological Process	neurogenesis	Interproscan
GO:0033674	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043066	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan