Gene detail

Detailed information of XP_020627926.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_525:412572...423331
NR annotation: XP_020627926.1, ATP-dependent RNA helicase DEAH12, chloroplastic-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110065164

ATGATTATCCCTGACCTTTTCTTATGGGAGTCAAGTGAGGAAGAATATGCAGCAATGGAAGATCGATCTAGGCCAGAAATTTTAAGAGTCCATCTAGGCCAGGCAATGTTGAAACTAATGGAACTGGGCATCGAAAATGTGACAGAGTTTGAGTTTGTTGAATCACCACCAGTGGAGTCAATGCAACTTGCCTTGGAGAACTTGAAATCGCTTGGAGCCACAGCTAATGGACAGCTTACAGGGCTTGGCCACAAGATTGCTCGAGTTCCTTTGGAGCCACGGTTAGCAAAGTTGTTATTTGATGGCATTGATCAAGGAGTCGGTGCTGAAGCATTGGCTTTAGCAGCCATTGCAACTGTAAGTAGGAGCCTATTCTTCCGCATGGGCAGCGAAGATGAAAAGCACATGGCTGACAGTAGAAAAGTCGGTTTCTGTCACAATGGTGGTGACCTGTTGACGTTGCTGGAAGTATATAGACAACACCTGAAGCAACCTAAAGGAAAGCGAAACAAGTGGGCCTTTGACAACAGCTTGAACGCAAAATCGCTTCGCTTGGCAGATGAGACAATCAAAGAGCTCAAACTGGCTTTGAAGCACGAGCTGAGCATTAGAGTACCAGATGCCGGTCAACAGAATGACAGGACTGATCGCAAGCTACAAAGGATTTTGGTATCATGTTATGCTGCCAACCTTTGTGTGTTCACTGGCCACCAGAAGGCAGGGTACAGAGTGGTGGCATTCAATCACTGTGCGCAGTTACATCCTACCTCAGCACTCAAGTTCCTTGGAGAAACACCTCAGTTCATCGTTTTTGAACAACTGCTCAAGACATCTCGTGATTTTGTCATCAACGTGACTCCTGTCGAAGAGAAGTGGGTTCAAGAAATGATATCGGATGGAACTCTCAACTATGACATGGAAGAACTAATTTCAACAGTGCTGACAGAAGTGGCTTTGCCTTGTAGTCGAGACCTTATGACGTTAGCGTTTGGAGGATTCCGAAGAAGAATGATTGATCAAGTTGAAGACACAGTGTCGAAGTGTTGTGATGGTGGTTTGGTTGTGCTAGAGACGAGCGAAGAATTAGGCCAAGTGAAAATCTTTGTGCCACCAGACCATACTGCCAAGGCTCTATCTGTTGTGGGAAGCCACTTAGAAGAAAACAGGAAATTGCTGAGGGATGAGCGAAGAGAAGAGTATCTAAACGAAGATTGTCAGGGCAGCAGAATTGTTTGGGGACAAGGTGGAGAAGTGCAGGAACTGCTAATGCCCCATATGTATCGAACTGTGACTGTCAGGGAGATTGGACATCGCAAAGCCTTGGTCGTCTTAGATTTTTTGAAGTCGGTTGGAGACATTGAGAAGCACAGTTTCAGGGAACAGAATGGTAAGGTGCAATTGTTTGCCACTTTCAAACATTCTGAAGACGCGGTCATGGCAGTTAAGGACTCTTCTGATACCTCTCTGGGTATCAACGTAGAAGTGCATCCGGTACACTCGATGTCTGATGGCGCACAAGCACATGTCCCTCAGTTTAAAGTGAAAGCCAAGTGGCTTCGACGTCCTGGCAAAGGTACAGGTTCCATTGAATGTTTCAATGGTAACGATTTTTCTCAGACTCTACGCAGTCTTCCCTCGCTTATGATAAAGTCAAGACAGGTCACGTTTCAAGCTGACAAGCACCGTGAAGGGCAGCTTTTCATGAGGGGACTCCATCCTGAAACCTCAGTGGAGGATGTGAAGTCTGCTTTCGAGGAAAGACTACCAACTGTAACACTGAATAGAGTATTTATCCACCGAGAGCCAGAATTTGAAACTACAGATGATACCCTCACCTTGCAGAGACAATCCTTGCTAGAGAGTCTTCTTTTCAAGAGGGGCATCTTCGCTGAGGAGGGCAGATTTTCCGTTTCGTTGATAAAACCTTCTCCTAAGGATATTCAGGGAATCGCCTTTCTGACGTTCCAAGACCCTGAGGTGGGTCAAGCAGCCGTGAGTGTTCTTAATGGAAGGCGCATCTCTGGTATTGGGGTCGTAACCCTGGAACCCAGACTTTCAACTACCTTGCGATGCCCCGAATATACTTACACTATTATCGAAGATAAGTTGGAGGCAGTTGTGAAGGAACTAGATCTGCTCTTTGGCACAAAGCTTGTTATGAAAGTAAAAAATCAACGCAAAGACAAGCTGGTCTCCATCGAAATCCAAAGCAACTGCAAGGAGCACTTTATTTGTGCCACAACAGTTCTCAGCGAAGTTCTCAACGTAGACCGGATTGACTGCAAAGCATCGAAAACCTTGGAAATTTTATTGACCGATCCATTGAAAGACGTTCTTCAAGCCATCGAAAAAGATACTGGAACTGTGATCAAACAAGATCGAGAGAACCAAGTTGTGGCAATTCATGGAAGCGAAGCTAGACGGAAATCAGCAAAACTGGCCATCAACAAGTTTCTTGACGACTCCATCACCAGTGACAGTCACGCATGGCAGATTCGGCTTCGGGAACCTAACAAGCCACGTGGGCTGCTGAAAGCTCTTTTTAAGAGATTTGGTGTCGATCTAAAAGGATTGCAGGATATTCCTGGTGTCCAAAAGATCCATGTCGAATTCTGCAGCCACGAACTTCAGATTCAGAGTTCTGAGGAGGCTCGAGAGACAATCAATCGCTACGTAGAGGAATGCTGCAAAAATCTTCCCCAGCAATCGTCCCTTTTAACATTCGATGATCAAACCCAGCTGACTTGTGGTATCTGCGTGTGCGATGTGGACGAGGCAGCCGACTTGTACAGACTCGCTTGTTGTGGCCATACCTTTGACAAGAGCTGTGTTATCCAGCAACTGAAATCTGCAGAGTTTCCACTTAAGTGTGCCACAGAGGATTGTGAAGAGCTCTTTGTGTGGAGAGATTTGCAGAATCTGCTGAGCGAAAAGGAGAGAAACAAGCTTGCTGCTAGTGCCTTAGATGAGTATGTTAAAGGGAATCCTGAAATTGTCAAGTATTGTCCAACTGCCGACTGCGGTATGGTGTACCGTGTCTCAACGGAAGGAAGACGCTTCACTTGCTGTGCATGTCAGGCCGAGATCTGCACGTCTTGCCAGGTGCAGTGGCACAACGGGCTCACTTGTGCCATGTTTAAATCAGGAAAGCAGGTGGAGGGACGTCTGGAAGAATGGATGATGAAGGACCCAAGCAGTAGGAAGACCTGTCCCATATGTAAGATGCCAGTTCAAAAGAATGAGGGTTGCTATCACATGACATGCTCTGGGTGTAAATCGCGCATGTGTGTGCGGTGCCTGGAGGTGTTTCCTACAGCAAAAGGGGTATACAATCATCAACGGCACTGTCAGAAAAAGTTAACAGCGTGA

Transcript

rna-XM_020772267.1

Protein

Uniprot

Gene family

Uniprot term	Description
F4KGU4	ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1
P0CE10	ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1
Q54F05	ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum OX=44689 GN=dhx8 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12818	DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22	EC:5.6.2.6	Spliceosome	ko03041	deepkoala