Gene detail

Detailed information of XP_020629040.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_638:691587...701331
NR annotation: XP_020629040.1, peroxisomal acyl-coenzyme A oxidase 3-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020773381.1

tgaaaacgccggctttgcgttttcgtgtggacggaaaacaatttgaaaacaaagcttgttttcgaaaacgataaacCACGATAATCAGGTGGTTTCCCTGCTcgggttttcctcaaacacaattccaaaatgaccggtgattgctgcgttttcaaatttcccagtCAGTCGTTCAACCCCTGAGAAGATGGCACTCCTGGAGTTTACTTACCCCTTCAGTTTAAGATTAGGAGTTTTCAAGAACCTTCATATAACAGTTCAATAAATAAAGTCAGTGTCCACTGTTCCTGTGATTTGCCGATGTGAAAATGTGTGTGCGGCAATTGCATAACTTTGATTTCTACTCGAAAATACGCCCACCAAGAGACGAGAGAGGGGAAGTGGAGGAGAGACTCGATCTGTAGCTCTTGAACCTCTTTTCACGTGAGCCAGATTAAAGGAAAAGAAGTGGTTCAGTTTAAACAGGGTGTTTTCCACTACGTCACTTAGCATCTTTTCCATCACAATAGATATTAATGATAATAGATATTTCTATAGCGCCTATCGAGATCTGTTCTAAGCGCTTTACAAAGGTAATagagctaaaaagaaagttctacGAGATAAAAATACAGAGTATAGTGATGAAAAGAAACGTCTTCAGTTTACGTTTAAAGAGATTTAAATCATCACATGAACGTATATCATTGGGTAGTTTGTTCCAAAGTTCTGGAGCTGAGACAGAAAAAGCTCTGGATCCATAGGTCTTTAGGTTAAAGTTAATAGGGTTAAGACGAAGCGTGTATAATGAGCGAAGTGTAGACTTTGGTTCTAGACGATGAATATCGAGTTATCAGTTCTTGAATGTAGGTAGGAGACTGCAGGTGGAGGGCCTTGTAGGCGAGAagtacaattttaaatttgattcttTCAGAAAGGAAGGAAGTGAAGCCAGTGAAGATTGAAGAGAATGGGGATGATGTGATCGTACTCACAGGAACCTGTGATCAGTCGAGCAGCAACATTCTGTAAAGATTGGAGCTTTCCATCCCCCATACTTCCTTCCCTTCTTTTTTCCCTCTCTCTCTTCGACTGGTAAATCTAGCTATTAAAACATCTTAATGTTTTATATGTGTAAAACCTAGCCTGAATCTTGTATCTTTCCCTTAGAATCTTTACAGAAAACGTAACACTGCAGAAACGGCTGGTCTGGTATTTTACCGACGGCTTTTACTCTGTACTGCGGCATCCAGACTCTCGCAAAAGCCGGTCCATCATCCAACCATACTCATACTTCGTTATTGGCGTGTTGCGTGTTCTGCTTATGAATAGAGTGTGAATATTTTTTGCGGTATAGAGGGGTCAAGCAACTCACTGATCACTGCAACCGTgtagactctgggaacgagattggtcGAGCTAGTGGTCATTCCCCTTGACTGACCTTCCCAGAAGTCCTCGGTGAACAGGTCATCTTGTGATACACTTTTCGCGCTTCCAAACAAATGATTTGTTAAAAATCAGGATTATATAGCGGAAGGAATCTGTTCCAATGATTGGAGAACAGACCTGTAGGTAGCACCAAAGAACTGCAGCATGTCACGATTCTCTTTGGACAGCGAGTCAGATCGCAAACATGGCATCGAAGAGATGGAAAAACAATTTCCTCCAGGACCATTGGACAGCTACAGAAAACAGGCTTCCTTCGACTGGTATCAAATGAAAGTGTTTATAGATGGCGGAGAGGATGTGGTCAGATTTAAACACAATGTCTGGAAAACTATGGAAAGAGATCCACTGTTTAATCGCGCAAACGATAGTAAATTGTCATTCGATGAACGTAGGCGACTCACAATGAAACGGTGCAAACGAATTGTCGAGGACAATTTTTTGTCTGATAGCGAGCTCATGGCGAGACCTCTCTTGGGTCTAGTAATCAATGACATTTTGGGAAGTTTTGACTGGAGTTTATCAGCCAAATATTTATTGAACTCATCGATGTTTGCTCTCCAAGTTAAAAGATCAAGCACGCATAAACATATTCAGAAGCTTGGAGATAAAGCTAGGAGGTTTGAGATCTTTGGATGTTTTGCGCTGACTGAGTTAACACATGGAAGTAATACCAAAGGTGTTCAAACCACTGCAACTTATGATCCATCAACACAAGAATTTGTTGTTCATACTCCCAACTTTGAAGCTACAAAGTGTTGGGTCGGCAATCTGGGTCAAACTGCTACTCATGCTATAGTATATGCACAGCTTTACACACCTGACGGCACATGCCACGGTCTCCACTCGTTTGTTGTTCAAGTGCGTAGCACCACAGATCTCTCACCCATGCCTGGGGTGACTGTGGGGGATCTTGGAGAGAAACTTGGTCAAAATGGACTAGATAATGGttttgtagcttttaacCAAGTTCATATTCCAAGGGAAAACTTACTGGGCAATAAGACAGCTGATGTGACACCTGCGGGAGAGTATGTTACACCATTTAAAGACCCAAACAAGAGATTTGGAGCTGCACTGGGGGCTCTGTCTAGTGGACGAGTGGCGATAACAAGTATGGCTGTAGCCAATCTGCGAATGTGTATGCCCATTGCCATAAGGTACTCTGCTGTGAGAAAGCAGTTTGGTCCACCAGGAAAGGGTGAGATTCCAGTGCTGGAATATCAAATGCAGcaaTGGAGACTTATTCCCAAGCTTGCGGCAACATATGCCCTGACTTATTTTGCAAGGACTTTTTATTTGAACTTTGTGCAGCTACAAATTGGTATGATGATGGGAGAAACAGGCAAACTTCAAGCAGCTTTGGGACGTGAGATCCATGCACTGTCATCCGCCAGCAAACCACTGGCTGGTTGGGTTGCACAGAGTGCTATCCAGGAATGCCGAGAGGCTTGTGGTGGTCATGGTTACCTTGCAAtcaaCAGGTTTGGTGAGTTAAGAGATGATAATGATCCAAACTGTACTTATGAAGGAGATAATAACATGCTTTTGTGGCAAAGCAGTAGTTACCTCTTGTCTCTTTTGGAAGCCAAGCAAAAAGGCTCAACTATTTCCTGTCCACTTCGCTCAGCTGACTTCATTAACAACATTGAACACATCACGACTCAAAAATTCCAGGCAAGGACTGAGCAACAATGCAGGGACCCTGACTGTAAGTATAGGCGAGTCTAAGCATGAACTGCGAAACTTGGATGATTGTCACTAATTCCAATCCAGTCAGAAATTTATCAAAGGGccgtggttttcttttttcagtcataGGACTGTTAATATATGCTACCTTTGtttaacaaagttaatttaattGTAAACATCAAAGCGGTTTTCAAAGTAATTGGTTGCATCGCCACGCGAGACGACttgcttaaggtaattcccctgaaataaaactgtcaatagatttttgttcacactttgtc

Protein

Uniprot

Uniprot term	Description
O15254	Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens OX=9606 GN=ACOX3 PE=1 SV=2
Q5RAU0	Peroxisomal acyl-coenzyme A oxidase 3 OS=Pongo abelii OX=9601 GN=ACOX3 PE=2 SV=1
Q9EPL9	Peroxisomal acyl-coenzyme A oxidase 3 OS=Mus musculus OX=10090 GN=Acox3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF14749	Acyl-CoA_ox_N	Acyl-coenzyme A oxidase N-terminal	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR029320	Domain	Acyl-coenzyme A oxidase, N-terminal	Interproscan
IPR012258	Family	Acyl-CoA oxidase	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003997	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005504	Molecular Function	fatty acid binding	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016402	Molecular Function	pristanoyl-CoA oxidase activity	Interproscan
GO:0033540	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0055088	Biological Process	lipid homeostasis	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00232	E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase	EC:1.3.3.6	Alcoholic liver disease	ko04936	deepkoala