Gene detail

Detailed information of XP_020629450.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_657:684258...690348
NR annotation: XP_020629450.1, aristaless-related homeobox protein-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020773791.1

ATGAGTGGGAAGGCAATCCGTTCGTCTTACACCATTGATGGACTGCTGGGTCTCAACCGACAAGATGAACACAAACACCTAGCAAAACCGGAACAAGTGATCGACGAAGCAACACATAAACCGGATCACAGCACACGGCACGACACAGAACAAGAAACAGCAGACCACAATCTCTTTTCCACAGAGAACGATTTGGAACTGAGTTTAACAAGTGAACAGGATGCAGTCGAGAATGAAGATGAAAAGGGTAAAAGCGACGACGAAGATCACGACACAGATGACAGCAAATGTTCTCCAGGGAAAAGAAAACAGCGCAGATACCGCACAACATTCACAAGTTATCAGTTGGAAGAACTAGAAAGAGCCTTCTCTAAGACTCATTATCCAGATGTTTTCACAAGGGAAGCACTGGCTATGAAAATTGATCTAACTGAAGCTCGTGTTCAGGTTTGGTTTCAGAACCGAAGAGCCAAATGGCGAAAACGAGAGAAGGCGCAAGGAGTCCGACTTCACGCCCCACTTGGATTAAGCAATGCTTTAGTTCCACCACTGCTATCTGCTTACACTTCAGATCTGAGTACAATGTGTAGCAAAACACATGACCAAGAATGGGATTCTAGTATTAGTTCTGCAGCACTGCCTCATCCACCGCCTTCTTTCCCGGCCCTTCGTCTTCCCATACACCCTGCGGCCTGCCCACAATCAGGTAGCATGGCCCACTTTTATTCACCTTATTACGCCCATCATTCAGACTACTACCCAGCGGCTACAGCTCTGAGCGGATCACTTTTGGCTGCCGCCACATCCACCGCTTATAAATCGCCAGTGTTTAAATTCTCGCCCGTTGTGTCGCGTGGTTCTCCTCCTCGAAGCAGTTCACCCGCCAGTGAACCAGACAGAAGGACAACAAGCATCGCAGCGCTCAGGATAAGGGCAAGAGAACACAGCGCTTCTTTCGGCTATCTTTCTTCTACGGAATGAACTTGTATTTGATACACTTGACTCATGTCTAATATCCCTTGAAAGAACGCTGGCTGGAGAAAATCGACACcatttgtaaaacttttcttacaatatcaatttttaatcagtttcgaaagaaaattatcatttgGTTATCCCTTTATTTAATTGAATCTTTTAACAGGAAAAAGTTCGGCTTTTAAGGTTTGCGAGTGTTCAGTTTCtgtaagtttgaattttttcgtGAATGGTGTGAATGTAAAGCAACTTAAGAGTTGTTAATTTGTTTGGGGTACGACTCAGTGCGAAATAACCGCCCGGTCAATAATTTAATAAACGGCTTTGTTTGCGTTACTTGCACACGAGTTCTTAACAAGGGATCACACAAATCACGCTGAGGAACCATTAACCATAGCACCGCTGTCGGCCGCTTTGTTCTCgtcaacaaaatattactttacTAATAGGATAGCGGGAAGGGGGACAAGACTGGGATTATCAAGGAATTAGTCGCATTAGACAATCTATCAATGACATAATTGGTGAATCGAGTACAGTTACCACCTGATATTGCCAAGTTGCCATATTTGGGGGCAACACCAGTGGTCACCTGATTGTCTTGCACGCACCGATGCGCTCTGTCACTCAGTGTGGAAAATTTGCGCCAAGTTTTGAGCGCATTCAGTGGACGTGTAAAGCACGCCATCATTAACTCATGACAACAGTCGAACTTttttatgaaaacaacaaatttgaataatttaattACGTTTTAAGCAAAACAGTGATATGTAATCAACGAGTTTTAATTACCGGCATGAAATTCGATTAGTGCTATAGCTTGTGATTGGCTTTGCGAAGGTCTTCCTGTATACCTTGTTTCTTGAACTTCCCTGTAAAATTACTAAGTTATTAGCACTTGGAGTGGCGCCGCTTTTTACTAAAGACGGCGTCCTTTTTGCTTGATAAATGAGGTTTACAAGAGGATTAAAGATTTGCTATGATTGCGTGTTTCATGATGCGGATCAGTGTTGCCTTGCAACAGTTCACACATCAGTCAACAGGGCAGCTTTCTCTTCTGttcaaatttgaataaaaatcattaaaattacaaaaattgatgaatattttttttctccaatttaGTGGTTACGTCTACCTAAATGCAACTTTATCTTTCAATAAATCTTCTATTTGGTATGACTTGTGGTCGTAAGATTTCAAGGGCTTCGGAAAACATTGGAAAAGTAACTATTCTAAACTGATCATTGAGGTCATTGTAAGGTGAACTGCGGATTGTTGTGTCAAGACCGATCTTCCGGCCTCTTGTCGAAGTGacttttaagaatttttttactttttacattCACTAActatgaattaatttttggttATTTTACGCCTGTTTCTGAACGTTAAGTTTAATTTGACTATATCAGTGAACAAAAGCGACATTGTTAGCCTGCTTTTTTTCTACCTTTTTAAGTTTCACTTGTTTTAACAATGCTTAAAACGCAAAATTATTAGCGCGCTAAATTGAAAACATCAATAGATTGTCTGGCTTGTTAGGCCGCCGAGCACTGATATCGGCCAGTCAAACTTCATGATTGGACAACTCCTTTACAAGCAATAACTGCGAGATACAATCATGTTTCCCTCCATAGCTTGTTATCGTTCCGCAATATTTCACAAATAGACGAGATGAGCACGATTTTACTGATGCGAACTCATCAGCCACCCTAtaagcagagccttttcttacggtacatatgctTTGTACCAGAAAAGAGATAgagaggctctgctcgcagggtgctCTTCAGCTTGCTTCATCAAGCCTTCGTCAGCCTATTCTGAATAACAAGCATACTCAATAAGTCCCATTTGACACTCGGCTGTCATACCACAAATATTCATTtggtattttgttaaaattggTTTGTCCGTAAACTTAATCTTTGTTTCGAGAACGCAATACTTTACAACTAACTCTGAAGTCGTTTGCCACTAAAACACGCGCTAAGAATTATTTCAGAGAACGAAATTTTAATTCTTCCGTCAATTAGTTAATATATTCATTGTGACGCGtgctaaaattattttgtccaTCCTCTTGACTAATATGTTATCTCCGAGTCACACGTTTCctaacacaattttttttccttttacgtGTTGGTTCAGTATAATTTGTGAAGTTTTGTCTGTCAAGGAAAATAAATGCacttttaaacaatatttgtttccaTGCAGTGAAACAATGAGCGACTTAACAGAGGGCTTTCACTTCAAGCGCATAAGCTACAGTAAGAGGGTGATAATCAACACCTTTTGTTATGCTAGCTTACTGCGTCTGTGTATGTTGCATATATTTATAGGCTAGTGAATGATTCCACATGATCGCTATGATTGCTTCAAAAAAAGCGCACATCCTCGGGACGCGAAAAAAGTGTCCGTGACTGGGGTTGGCCGCTTACCAGAATGGTGCTTTCAAGCCACTAAAGATGTAAGAGAGAATGTAACAAAGTATCACcgtattaattattttgttttattacctTATGCAGTGCCACAATAATAACGATAACTGTATtctttttctccagcttctcagcgGTCCGGAATCCcaaatccttgaatctgatcAGCCAATCACGCGCGCTCCAGCGGTCCTGATTTTACCATCTGGGCCCCGATTACGGACCGCtccaaaatttcaaagtttgGCAACTTCTCAAGCTCTTTGTTACATCgcaaaacaacgtaaaatgtaaTCTGTCAACAGAGGGTCAAACAATTATGGATTCCGATAACTTTTTGTGCCCGAAATGTTAAACGTAAGCGTACGCCAGATTTGACGGTTCTCAAGGGGTAAAATGGGAACTGGGATTGGCCTGTTTTTGCCCTGGGAAAATGGGAATTAGGTCACTGGGAATggaaagaaatgtcaaaaatgggaatgggataaatattttgtaaccatGACCAGTCAAGACATCACTTATTTCCTGGGATCGAGAAAcgttagaaaatgttttaagtacCTTGTTCATGTCAATTTTGAGCATGTTAATCCAGATCCAGCATGtacatagcctgcgaacgcagacgtatttccggctgtcacttggttcagGCGAACCAAGTGACGGCCGGatatacgtctgcgttcgcaggctagcatGTGCAGGACTTGTCACTATTTTCCTGTTACAAAATGAGATCAAATGTGGAGGTACTCGATCTTAATCCTTCATGTTCTAAATCAGCACTCCCCGCATGCCATAACACTTTTTAGAGACACTTTTACATTGTGTGAATATGCAATGATGTTTGGAACATCAGTTGAAGAAGCTGTGAAATGAGCTTCTAAGTGGACAGCAGCGAACTACACACATCCAAATTCATATTACAAACTGCCAACATCACATACAGTTTCTTTGCCTCACAATTTCAGAGCCAACCTCACAGGAGATAACCAGAAACGAGCAAGCTGAGATGGGGGCGTGGGCTAAGATGCATGATAAATCCGTCCGACAACGAAATGTAAAACAGGATAGTAGAATGAGCAGGACAGGCACTTTGCCTCTGAACTTATATAGAGCTGAAATGCTCTtgaaacgagtcaatttgagtTCACTCTAAAGCGTACAGAGTTCCAAGCGAAGATGAATGAGCCAGCTAATTCAAATGAGAATGCCAATTTACCATCAGCGTCTCCTGATGAAGAGGTGGAcagcttaaggacgttcgcgctaattacTTCTGCCCATCCTTACTGCGTatgcaaattcacacgccacgccATGCATGAGCGCGCGTGCTaagaacaatgatagggcagatggccattgctatagctttgcctggatttaacgatctcgaacgttcggtgaccccta

Protein

Uniprot

Uniprot term	Description
O42115	Aristaless-related homeobox protein OS=Danio rerio OX=7955 GN=arx PE=2 SV=1
Q26657	Aristaless homeobox protein (Fragment) OS=Strongylocentrotus purpuratus OX=7668 GN=ALX PE=2 SV=2
Q96QS3	Homeobox protein ARX OS=Homo sapiens OX=9606 GN=ARX PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF03826	OAR	OAR motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003654	Domain	OAR domain	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09452	ARX; homeobox protein aristaless-related	-	Transcription factors	ko03000	deepkoala