Gene detail

Detailed information of XP_020629858.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_680:1393435...1409495
NR annotation: XP_020629858.1, protein CASP-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020774199.1

TTCTAAACCAATGacaactctttttttatttgtgggACGTTTTACACAGTGCGCATTGCGCATGACGCCGAGTTGGCGataaacaaatatggcggcTTCGTCGTTCCAGTCTATGCGAAATTTTTGGAAAGAATTTTCCCTTCCAGAACTCCAGAAATCATTAGACACGACCGCAGCAGAACTAGCAGATCGCCAAGATGAATCAGATACTTCAAGGAAGAAGCTTGTCGAACTTAGCCgtgattttaaaaagaatactcCAGAAGAAATCAGGAAAAAGATGGCACCTCTTTTAAAAAGTTTCCAAGCTGAGATTGATGCTCTTTCAAAAAGAAGCAAGGCATCAGAAACcgcttttctttcaatttataaGAAACTTGTGGATGTTCCAGATCCATTACCAGTTCTTGAACAGGCTGTTGTTCAGCAGCAGAAAGTTTCCAAACTACAGGactatgaaattgaaaataagcAACTAAAAGAAACCTTAGAAGAATACAACACTGAATTTGCTGAGGTTAAAAATCAAGAGGTGACCATCAGTAGACTAAAAGAGAAACTGAGAGAGTATGAAGACAAGATGGAAGACAGAGTTCAGGCAAGAGTGAAGGACAAGGAGAAAGACATGCAGAAGATGTTTTCTGACAAAGAGAGAACACTGCAGGAAACTCAGGTTTCTGTTGCTAAAAAGCTTGGTGAAGCAGAGCACAAAGCTGCAACCCTTCAAGCTGCCCTGGACAGTGCACAGTCAGATCTATTTGATGTGAAGGCCAAGTTTGATGAAGTAACAGCTGCAAGGTCTTCAGAAATTGAAATACTGGAAGCCGATGTAGAGAGAGCAAATCAGAGAGCACTGAGTGCTGAAAGACAAGTTGAATCTCTGCGGGAAGAGCTTGTTGCTGCACAAAGTGCATTACAGaATGCAAGTGACTCAGGAAGGCCAAGCATGGTAAGATTACAACAAATGTTGATATATTTGGCAATATCTCAGCTAGTAAGTGATGTGCAGCATTTACAAGTGACACAGAGCAGATTGAAAGAATCAGGAGCAAATGagaaTAAATCCTCTTATAATGCGCCCTTCACggatgattttaatttaatttccatgCTATTCTCTTTTTCAGGGCTTCAATCTGAAAATACAAGTTTAAAAGTGGAAAATGTCGACATAACAGGTCGTTATTCAGAGCTTCATTCACAGTACAATGAGGCAGTGAACACAGTAAAAGAACAGAAGGAACTTATTACTCAACTGGAAACAGATCTTCTGAGTGTGAACGCTCTGCCATCTGCATTCCGTGGTCAGGGAGAGGGTGAGGCAGGGCCTCCTTCAGAGAAAGAACTTGTTTCCAATGCAGTACAACAAGCCGTTGCACCATCAGTTGGTTTATCAGGGGAGAACGTCGCAATGGAATCTATTCTTCCCATTGTAGCAAGCCAGAGAGAAAGATTTAAAATCAGAAATATGGAGTTAGAAGCACAACTACGCCATAACCAGCAACAGATCAGTGTGTTACAAAACGAGGTGGACACTTTGCGGTCGGATAACGTGAAATTATACGAGAAAATCAAGTTTCTCCAGAGCTACCCAACTAAGGGTGCTGGGGGTCGAGACGAAGAAGCTGCAGTCAGCAGATACTCGTCACAATATGAACAAAGGTTGGATCCCTTTTCGGCTTTCAATCAGAGGGAGAAACAGCAAAGATACCTCGGGCTCAGTCCTCATGAAAAAGTAACTCTTAACCTGGGTCGCTTCATCATGTCAAACAAAGTTGCCAGAACGATCGCGTTTTTCTACACACTGCTTGTTCACTTGCTGGTGTTCTTGGTAAGTAGAGGGGAGCATGGAAACTAACGCTCAGTCGTTTAGTTGTTGATTAAATGTCAGTTGTGCGACGTGAGAATAACAATGTAAGCTATGAGTGTGCATTTTGCTGCACGCTTAGTTATACTGAGTTTGATAGCGCTGCTTTAGTAGCTATGTTGTGGTGTGATTGATCTCGCTGATGATACATCCAGGAATGCTTTATGGGGCGATTTTACGTCACAATTGCACGGCATGCATTACTGACAAGAAATTTCGAACAATtctaatttcggacaaaaaagtgtcagaaaattaaaaaaccaTCTGAAATGTTTAAGCGTCCGGAAGATTTACAGCATGCACAAAATGAAACTgtgaagtagctccaaagctcttactTTTCTTTATGGAACGAACTCTTGAGATACGCTTGAGATACGTAAcagcttgatagaatttgtgttgttttctcgTCGGTGTGTCTCTAAAACCTTGAGGGAGCAGTAAGACTATGAGACTATCATTCTCACAGATTTTGTCTCAGTCTAAATCGCGTTTGGTGGCTTAAATTTACTTAAGCTATGTTTCAACAAAGTGTCCGAAACTTgcccgaaatgagataaaaagtgtccgaaattaaacgtccgaaatgttttccaagtacaggtaaaggtaaagtctg

Protein

Uniprot

Uniprot term	Description
P70403	Protein CASP OS=Mus musculus OX=10090 GN=Cux1 PE=1 SV=2
Q13948	Protein CASP OS=Homo sapiens OX=9606 GN=CUX1 PE=1 SV=2
Q5R8V1	Protein CASP OS=Pongo abelii OX=9601 GN=CUTL1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08172	CASP_C	CASP C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012955	Domain	CASP, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14043	CCAAT DISPLACEMENT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09313	CUTL; homeobox protein cut-like	-	Transcription factors	ko03000	deepkoala