Gene detail

Detailed information of XP_020630404.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_728:1670013...1675781
NR annotation: XP_020630404.1, cdc42 homolog [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020774745.1

CCAATTCGTCAACCAACGCCCCTGGAAAGCCGGACATCTCGTTGCAAAAGTGGAATTCATGGAAAAAGCGGTAGTTATATAGTTTAGATACCCGCTCCTCTTACGACGTTTGTAGGGCATATAAGGCGTCAAAACGCAATAACCGGTTTTTCACATTGGCCGAAGACCGTAAAATTTCTTATATTGTAGCAGTATGCAAACCATAAAGTGTGTTGTAGTTGGGGACGGAGCCGTAGGAAAAACCTGTTTATTGATTTCCTACACAACAAATAAATTTCCTAGTGAATATGTACCGACGGTATTTGATAATTATGCTGTTACTGTTATGATTGGTGGTGAACCTTACACATTAGGATTGTTTGATACTGCAGGTCAAGAAGATTACGACAGACTGAGACCCCTTTCCTATCCTCAGACAGATGTTTTCCTTGTATGTTTCTCTGTAGTGTCCCCGtcttcatttgaaaatgttaaagaaaagtggGTACCAGAAATCACTCATCATTGTCCAAAGACACCTTTTCTACTTGTTGGTACACAAGTTGACTTGAGGGATGATGCTGGAACGTTagaaaaactgtcaaagaaCAAGCAGAAACCCATAGGTAATGAGGGTGGTGATAAGTTAGCACGTGAGCTGAGGGCTGTGAAATATGTCGAATGCTCTGCATTGACACAGAAAGGCTTGAAAAATGTCTTTGATGAAGCAATACTAGCTGCACTGGAACCTCCTGAGCcagcaaagaagaagaaatgcaCATTGCTTTGAAGGACAGACTGTTAAATAATGAGGAAAGAACACTTGCCATCTTGATTCAAATGGACAAGATTTTGATTCTCCACACACGAAAAATAGTACTTATTCAGATCTGGAATTTATCAAGTGTGGATCAAGTGTACTAAAGAGAAAATAGCTGTATAGGATATTACTAGCAATTACTGGGAGGAATTCAGAAATAAGTTCTGTTTGCTAGAAAGTTTaaagtaaaggaaaaagaacacaTCTTGAGCTCCCAAGGGACAATTCTTTGTCATATGAGGACAGTCTTGTGGCTAGGTTGAATCTTTCGCTCAACCTCATTCCTGCTTTACTAGCAATGAAATACTGACAAAAAGTAAGTGCATGTAATTCAGAACTTTTGAACTTGTTAGGATATATTTTTGCATGGTTCAAAggggaaaataatttgaatagcTATTTGGATAGCAAGATCAAAAACCCCTAAAAGCCACAGACTTCTGGCCTCCTTGTACATTTGTGTAAACAGTCATTTCTTCttaaaatatattgaaattatAGAGGAATGGAAAATGTTACTTTGACTGCAATATTAATTTCTAGAACACTATTTGTAGCCACTATGTGTGACCAGTTTTtgtgttccagaaaatatctataccccaGCCTGCAGAGCGTTTTTTGGTCTGAACCTGCCAtctctctggaaattccagttttggttcatactttcctttaaaaatgttGCCTTTTTAGAGCCCCCTGTTCCCTCCTTAGAATGACCCCTATGTTGGGTTGGTATCgctattttctggaaccatAAATTTGTCTTACGGTGTGCTTGATTTAGCAGTCAAGTTCCAAGCACTCTAGAGATTGTTTTATTAATACACGTAATATATAGATAGTTTCACCTTCGATGGTCATGGAGGAGTGACTCTACTTCTGTGGGTTCATTCTGATCTACAATGAAACACAGACTTGATATGGAAGTACccttttaaagcaatttctagAGTGTTTGATGTAGGAGAAAAGTAAGGAATAAATTCAGTGAATCTGCCCACTTCGGTTGTGGTAGCCAAACCAGTTACTCCTGTTTTTCCGTGTTCACTGATGACTTCTCAACATGTTTGAGAACGCTGGCTTTTAATTATTTACCAGTATGTCTGTGTTTTTCTGCTGTGGCCCTATTTTGCTCTTTTACAGGTGTGCCGACATTACCAGTTCTCTTAATTAGGTGGGAGAAACTGACTAATATCAAAATATATTAAGTTCCTTCATTCGTGTGATCTGCACATTGACTTAAGTCGAtatgcaaaaaagaaatttgatgaaGATCACTTGGTAACAGAGAGATGTGTTCCTTTAATTAATAAATGTACATGAAGGTTCTTTGTTGTGTAAAGACCAATTTATAATTCCTAGCTTGTCTTTTGTGctctatttatttttattcaacattaTTATTGAGTTGAATTGTGACTTGACTGAATTGCTTGATAAGTGATCTAATCCCAGCTGTTATCAGTAATATTATACATGTTTGGAACATGCAGCTAATTATCTGAAAAGGCCAGGCTGATAGTGTAGACTTGAGTTTTTGTAGGAGTCGGTACACTTAGGTCATGGAAAAGTCAAGAATCATTCTGATCAATAAATGAGTCGATAAATTGCAAACGG

Protein

Uniprot

Uniprot term	Description
Q29HY3	Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Cdc42 PE=3 SV=1
Q2KJ93	Cell division control protein 42 homolog OS=Bos taurus OX=9913 GN=CDC42 PE=1 SV=1
P60952	Cell division control protein 42 homolog OS=Canis lupus familiaris OX=9615 GN=CDC42 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037874	Family	Cdc42	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0007163	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0032488	Biological Process	Cdc42 protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04393	CDC42; cell division control protein 42	-	GTP-binding proteins	ko04031	deepkoala