Gene detail

Detailed information of XP_020630901.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_739:55240...59397
NR annotation: XP_020630901.1, GTP-binding protein ypt1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020775242.1

aaaattaaatgcaGGGTCAAATCAATGATGAAAATGACAGTTCAAAAGATACATGTAGGGAGGTCCAATGTCCGCCATATTTATATTGCAAACCCGTTTTGTGAAAGTTAACAGTCGACGCtcggcgaaaaaaaaaaggcgagGCTACTAAGCTAATTCGGCtcaaatttcagcaaaaaacCCTCAGCGACCCTCGGCAACAAACATGTAGGTCCCCAGCTGCAGTGGGTCGTTTTCCTCCGAAATTCAATAATTGATTGATGATTCGAATCTGTCAGTGTGAATTAATGTGTGGAGCATATGCCATTTAAATACACATTGTAAAGCTGTTGCCAGTGGAGTATCACTGAATTCAGACTGTGTAATGGTCAATACATACAAGGTTGTATTATGTGGAAAGACTGGTGTGGGAAAGACGTCCCTTTTTCGACGCATGTGTGGACTGCCTTTGGACTGTAAGAAGTCTGGCAAAACAACAAAGGATCATGAATGCAAAGTAACAGTGGAAGTTGAGGATAAAACTGTTGAGCTTGATCTGTGGGACACTCTTGGGCTTGAGGCACATGCCAAGTTGACACGCTCTCACTTTCTACTTAGCCAAGCCGTTCTGTTTGTGTACAGTGCAACTGATATAGATTCACTTAGTCAAGCTGCTGAACTGCTACCCTTAGCCAAAATGGATGCACAAggagcttgttttattttgattagaAATAAGATTGACTTGGTGGCAACTGtcagtgatgatgatgagatGGCAGCCATTTCCACTGATGCCTTTGCACTTCAGTTTAGAACTTCTGCTGTGACCGGTGAGGGAATAGAGAAAATGCTACAATCAGTAGCTTCTCATTTGATGAAAAAAGCCACGCCCATGAAATCCATAGGTCGTTCTACATGCTTGGAGGGATGCCCTGAAGGCAGCTCATCTGCCCAATTCTCTTGTAATGGAACTAATGAGATTGTTACTTTGCAAATGGAAGTACCTTgcaggaaaaagaaatgctgCTATCGCTAACATTAGAAACAACTTTTAAAGTTAGTAATAATGTGTTTTGTtagtgaaaatgttttgaagtccTGGCAATTTCCAAGGTTCAGTTATTCAGAGGATCagtactaactacttattaaccctgagtgaggtctttatgggaaaatttcaaaccgagaccttgacgtattgaccgagcgatagcgaggtcaatacagcaagactgaggtttgagattttcccacaAAGACTGAATATTTAAGggtaataagttgtttattataattatggctttttgctttgtttttgggGGCCCATAATCAGCCCATGGGCATTACGGAGAGAATAAATAAATGCCctacaattggccaatcagagcgtgcatTATATCgtctacaaacacaagccataataataatgtaaattatGTCTACATGATGATCCATTATCTACCCACTTGATGTACAAGGTAGACAGCGTGGAATCGCCTATagcaaaccaatcagattggttAAAATGACAAATAAGTAATAAGGATTTTATCATGAAGTTTAGTAACACTTTTTTATTACTTGGAGAGGTTTTAAATTGAGTGCTGGAAAGTAAAcatgtttggttttggttttgctatgGTTTCAgtgagattggctgagtggtCTAGTTTGTTTAagtaattgatttggttttggttttatgacaattgaaaaccgctctattaatAGAAAGGGGTAGTACGAGTAATACTAATATTGACATTAATagtgctttatttttttaaatgttttattgtgaCATGTAGATGTACTGTACATAATGTTAGTTTTAGGTAGTGTTATATATAACATAAATGAGggataacattatttttaaattttattctatGATCATTGGGATAAACACTTGCAAATGGGGATGTATTTGGTTTCTGACAGAAAGaaactggagccaagagtgttgctgTAGCAATGGCATGACTGTTGACATTCTGATTCTTTTGTCATGTACATTTTTGATGCCAAGGATGAAAAACACTGCCTTTATATTTCTAGATTCTTATTTTATTGGAACTACATTATAAATTTCTATTTGTACATGCATTTATGACAtaatcactttcctcatttgcataacacAAAATCGTaataaatatctctaaaatgaaagatgatatttcaaaaaggaa

Protein

Uniprot

Uniprot term	Description
Q92928	Putative Ras-related protein Rab-1C OS=Homo sapiens OX=9606 GN=RAB1C PE=5 SV=2
Q2HJH2	Ras-related protein Rab-1B OS=Bos taurus OX=9913 GN=RAB1B PE=2 SV=1
Q9H0U4	Ras-related protein Rab-1B OS=Homo sapiens OX=9606 GN=RAB1B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47978	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07852	RASL11A; Ras-like protein family member 11A	-	GTP-binding proteins	ko04031	deepkoala