Gene detail

Detailed information of XP_020631105.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_754:1352673...1378958
NR annotation: XP_020631105.1, dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110068077

ATGTCACTCTTCTATGCATCAGCCATCAGTAAATATTTAGGAAATTGTAAGTTACCAGCTATCAAAGGTGCTGAAGTCACATTATCAGAGGCTGTAAAAGAAGGGTCAGAAATGACTACCTTGTTTTATGCTGTTGCAGCACAAAATTTTTTAGGACTCAAAGTTGATACTGGTGAAGTGCTCAAGGCGGTGAAGGCAGCCATCAACTCAGATGAAGACAGTATCCTTGGGGCAGCATATGCCATGCTTACTGCCACAAGGCTACCTAAGGGCACAGATGTGTCTTTTATTACTGAAATGATTGAGGATACTGTGGCCCAGGCTGACGAAGTTGATAACAGTTATTTACAGTTTGAAGCTGGACTGTACCCTACTGCAAAAGTTGTGTATGCCACATATGCTCTGTCAGAATTTCTGGGAAAGGCTCCAGCTATCACGGAGGAGCAAGTAATCAAGTTTGCCAACTATCTCCTCTCACGAAAGCATGCACAATCCATGAAAGAAATAGGAGCTCTTTTGTTTGCACTTGATAAACTTGGCAACAATCCGTTCCATGTGCCAGTTGTGTTTCAGCTCTATGGCTCACCAGTTGTCTCTGATGACAAAAAGATGGTCAAGGTCCGTGTCACTAATGTCATGGACAAGGCTTTTGGTAAAATGACTGTCACTGGTACTTCTGCCGAGGATACAGAGGGAACCACTGTCCTTAGCAACAAGGTCTTCACTGCTGGCCCTGACAATTATGAGTTGAATTTCATGACATCCAAGCCAGGACCTGGAGTTTACACCATCAACATCAGTGCCAAGCCACATAAGGAGGACAAGCGTCTTCTGGGAACAACCAGTGGTCAGGTGAAAGTCAAAGTTGTCACAAAGGTCAATGTAGAAGACGTAGAGTTGTCAGTTGTTGACAAAGAGCAGAACATCAAATCCAAGACTCTCAGTGTCAAGTATCCTACTGCTATTACCAGCGTGATTGAAGCCGACTACCATCAGAAAGTGGTGATGAAGTTTTCACTGAAGAGTGAATCATCTGGAGAACTGTTCACTCCTCATCAGGCTTTTGTTAGGCTCACCAATCAGAAAACAAAGCAAGAAATTTTCTTTGTTGCTGAGCCGGAGCCGAGCAAGGTGTTCAAGTTTGATTTGGATGTTGGTGCCACTGCCAAAGACTCCTTTGGTTCGCTTTCTGGAAAATACAAGATGGACCTCATTGTTGGAGATGCTGTCATTCAGAATCCTTTTGAGTGGAATGTTGGTGTTCTGTCATTAACATTTGGTGAAGATGCAGCCAAGCCAAGCAAGGACAAGGACGCCATGTACAGTGCTAGACCTAAAATCGAGCACATGTTCCGCATTCCAGAGAAGCGTCCTCCAAAGGCTGTGTCCACCGCCTTCACTGTACTTGTTTTCCTTCCACTCGTTATTATGCTTATTGTGGTGAGTATTATTGGANCTTTTGGTAAAATGACTGTCACTGGTACTTCTGCCGAGGATACAGAGGGAACCACTGTCCTTAGCAACAAGGTCTTCACTGCTGGCCCTGACAATTATGAGTTGAATTTCATGACATCCAAGCCAGGACCTGGAGTTTACACCATCAACATCAGTGCCAAGCCACATAAGGAGGACAAGCGTCTTCTGGGAACAACCAGTGGTCAGGTGAAAGTCAAAGTTGTCACAAAGGTCAATGTAGAAGACGTAGAGTTGTCAGTTGTTGACAAAGAGCAGAACATCAAATCCAAGACTCTCAGTGTCAAGTATCCTACTGCTATTACCAGCGTGATTGAAGCCGACTACCATCAGAAAGTGGTGATGAAGTTTTCACTGAAGAGTGAATCATCTGGAGAACTGTTCACTCCTCATCAGGCTTTTGTTAGGCTCACCAATCAGAAAACAAAGCAAGAAATTTTCTTTGTTGCTGAGCCGGAGCCGAGCAAGGTGTTCAAGTTTGATTTGGATGTTGGTGCCACTGCCAAAGACTCCTTTGGTTCGCTTTCTGGAAAATACAAGATGGACCTCATTGTTGGAGATGCTGTCATTCAGAATCCTTTTGAGTGGAATGTTGGTGTTCTGTCATTAACATTTGGTGAAGATGCAGCCAAGCCAAGCAAGGACAAGGACGCCATGTACAGTGCTAGACCTAAAATCGAGCACATGTTCCGCATTCCAGAGAAGCGTCCTCCAAAGGCTGTGTCCACCGCCTTCACTGTACTTGTTTTCCTTCCACTCGTTATTATGCTTATTGTGTGGATCAAGCTGGGAGCGAACCTATCGAATTTCCAGTTTTCTCTTGGATCAATTGTCTTCCACTTAGGACTGGGTGGTATATTTGTACTATACTACTGTTTCTTTGTCAGCCTGAACATGTTCACCACTCTTAAAATCTTGGCTCTTATTGGTGGCCTCACGTTCCTTGGCGGCAACAGTCTCTTGAGTAACATCGCAGCCCGCAGGTGA

Transcript

rna-XM_020775446.1

tttattccttcTGTTAAATTTCAACAGGATGTTTGCAAGTTTGCGAAGGATAATGTTGATGGAAGCAGTGTAATGTCACTCTTCTATGCATCAGCCATCAGTAAATATTTAGGAAATTGTAAGTTACCAGCTATCAAAGGTGCTGAAGTCACATTATCAGAGGCTGTAAAAGAAGGGTCAGAAATGACTACCTTGTTTTATGCTGTTGCAGCACAAAATTTTTTAGGACTCAAAGTTGATACTGGTGAAGTGCTCAAGGCGGTGAAGGCAGCCATCAACTCAGATGAAGACAGTATCCTTGGGGCAGCATATGCCATGCTTACTGCCACAAGGCTACCTAAGGGCACAGATGTGTCTTTTATTACTGAAATGATTGagGATACTGTGGCCCAGGCTGACGAAGTTGATAACAGTTATTTACAGTTTGAAGCTGGACTGTACCCTACTGCAAAAGTTGTGTATGCCACATATGCTCTGTCAGAATTTCTGGGAAAGGCTCCAGCTATCACGGAGGAGCAAGTAATCAAGTTTGCCAACTATCTCCTCTCACGAAAGCATGCACAATCCATGAAAGAAATAGGAGCTCTTTTGTTTGCACTTGATAAACTTGGCAACAATCCGTTCCATGTGCCAGTTGTGTTTCAGCTCTATGGCTCACCAGTTGTCTCTGATGACAAAAAGATGGTCAAGGTCCGTGTCACTAATGTCATGGACAAGGCTTTTGGTAAAATGACTGTCACTGGTACTTCTGCCGAGGATACAGAGGGAACCACTGTCCTTAGCAACAAGGTCTTCACTGCTGGCCCTGACAATTATGAGTTGAATTTCATGACATCCAAGCCAGGACCTGGAGTTTACACCATCAACATCAGTGCCAAGCCACATAAGGAGGACAAGCGTCTTCTGGGAACAACCAGTGGTCAGGTGAAAGTCAAAGTTGTCACAAAGGTCAATGTAGAAGACGTAGAGTTGTCAGTTGTTGACAAAGAGCAGAACATCAAATCCAAGACTCTCAGTGTCAAGTATCCTACTGCTATTACCAGCGTGATTGAAGCCGACTACCATCAGAAAGTGGTGATGAAGTTTTCACTGAAGAGTGAATCATCTGGAGAACTGTTCACTCCTCATCAGgcTTTTGTTAGGCTCaccaatcagaaaacaaagcaagaaattttctttgttgctGAGCCGGAGCCGAGCAAGGTGTTCAAGTTTGATTTGGATGTTGGTGCCACTGCCAAAGACTCCTTTGGTTCGCTTTCTGGAAAATACAAGATGgACCTCATTGTTGGAGATGCTGTCATTCAGAATCCTTTTGAGTGGAATGTTGGTGTTCTGTCATTAACATTTGGTGAAGATGCAGCCAAGCCAAGCAAGGACAAGGACGCCATGTACAGTGCTAGACCTAAAATCGAGCACATGTTCCGCATTCCAGAGAAGCGTCCTCCAAAGGCTGTGTCCACCGCCTTCACTGTACTTGTTTTCCTTCCACTCGTTATTATGCTTATTGTGGTGAGTATTATTGGANCTTTTGGTAAAATGACTGTCACTGGTACTTCTGCCGAGGATACAGAGGGAACCACTGTCCTTAGCAACAAGGTCTTCACTGCTGGCCCTGACAATTATGAGTTGAATTTCATGACATCCAAGCCAGGACCTGGAGTTTACACCATCAACATCAGTGCCAAGCCACATAAGGAGGACAAGCGTCTTCTGGGAACAACCAGTGGTCAGGTGAAAGTCAAAGTTGTCACAAAGGTCAATGTAGAAGACGTAGAGTTGTCAGTTGTTGACAAAGAGCAGAACATCAAATCCAAGACTCTCAGTGTCAAGTATCCTACTGCTATTACCAGCGTGATTGAAGCCGACTACCATCAGAAAGTGGTGATGAAGTTTTCACTGAAGAGTGAATCATCTGGAGAACTGTTCACTCCTCATCAGgcTTTTGTTAGGCTCaccaatcagaaaacaaagcaagaaattttctttgttgctGAGCCGGAGCCGAGCAAGGTGTTCAAGTTTGATTTGGATGTTGGTGCCACTGCCAAAGACTCCTTTGGTTCGCTTTCTGGAAAATACAAGATGgACCTCATTGTTGGAGATGCTGTCATTCAGAATCCTTTTGAGTGGAATGTTGGTGTTCTGTCATTAACATTTGGTGAAGATGCAGCCAAGCCAAGCAAGGACAAGGACGCCATGTACAGTGCTAGACCTAAAATCGAGCACATGTTCCGCATTCCAGAGAAGCGTCCTCCAAAGGCTGTGTCCACCGCCTTCACTGTACTTGTTTTCCTTCCACTCGTTATTATGCTTATTGTGTGGATCAAGCTGGGAGCGAACCTatcgaatttccagttttctCTTGGATCAATTGTCTTCCACTTAGGACTGGGTGgtATATTTGTACTATACTACTGTTTCTTTGTCAGCCTGAACATGTTCACCACTCTTAAAATCTTGGCTCTTATTGGTGGCCTCACGTTCCTTGGCGGCAACAGTCTCTTGAGTAACATCGCAGCCCGCAGGTGAACTGGTGACAAGACTTtatccctcccctcccctgtgTCAATAAGAAACAGAATCGGGAAGGAAACTCTTATGTGTACTCGAAATATGTTAAGTCACAAAATGACCT

Protein

Uniprot

Uniprot term	Description
Q9GL01	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa OX=9823 GN=RPN2 PE=2 SV=1
Q5RBM1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Pongo abelii OX=9601 GN=RPN2 PE=2 SV=1
Q3SZI6	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus OX=9913 GN=RPN2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05817	Ribophorin_II	Oligosaccharyltransferase subunit Ribophorin II	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008814	Family	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12640	RIBOPHORIN II	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006487	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008250	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12667	RPN2, SWP1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 2 (ribophorin II)	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala