Gene detail

Detailed information of XP_020631235.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_761:345148...347469
NR annotation: XP_020631235.1, NF-X1-type zinc finger protein NFXL2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110068196

ATGAAAAAAAGTTTGCCTTGTTTCAAAGATCCCGAGGATTATAAAGGGTGTAACAGCAAGTGTACCAAAGTTCTCGAGTGTGGCCATCCTTGTTCAGGAAAATGCAAACAACGCTGTGAATGCAACACCGAAATTGAAGTTGAACTACCGTGTGGTCATCGAAAACGAGTTTTGTGTCCAAAGAAAGACAGGCCACCACAGTGCGCCGAAAGATGCAGGCGAGTACTGAACTGTGGACATGATTGCCACGGTATTTGTCACGAAGACTGTGCAATGCAAAAATGTGAAAGTGTTGTCTTCAAATTTCTTCCATGCGGCCATCAGCAAAGTGCTCCTTGCCACCTTGACCCCAAAAAGGCTTTTTGTTACGCTCCATGCCAACGACAACTGGATTGCGGACACAGGTGTTCTTCTGTGTGTGGCCGTGTTTGCCACGAGGTTCGATGTGAGGAAATGTGTCAAAAGAAGTGTAAGCGAGGTCATGGCTGCCAACAACGGTGCCACTTTGGTTCGTCATGTAATGATTGCATGGTAGTGGTTAACATGACAATCCCCACATGTGGACACAGCATTGAGATCCCCTGCCACGTTGATCCATCTTCACTGAGGTGTAAAAAGCCATGCGAAAGAGTAAGGATCTGCGGACATCATTGTCAAAACATTTGCAGTAAAAAATGTGAAGCTCAAGCGTGCAAGGAACTCGTAAAAACAACGTTACCATGTGGTCACGAGGCAACTTTACCCTGTCACAAGGATCCCGAAAAGTACAAATGTCAGGAAATAGTACAGGTTTGTCTATCATGTGGACACAAGACGTCCTTGGCCTGTCATGTTGCAAAAGCGAAGGTAAAAGACATATTATGCAACGTGAAAGTTGAGAAAGAACTACCCTGCAAGCACAAACTCACTCTTCCCTGTCACAAAAATCCTGAAGAGTGCAAGTGTAAGAAGAAAGTGGAAGTCCAACTGTCGTGTTGTCATATGACGTCTCTCATTTGCTCTACTGTGACAGCAGACTTACAAAATGTTTCTTGCAAGGTTAAGGTGAAAAGAAGACTACCATGTAACCACGAGATAACTATTCCTTGCTACAAAAACCCCATGGAGCACATTTGTGAAGAGGAGGTCGAAATCACCCTTTCCTGTGGACACAAGAAGCTCACAACCTGCTCTAAAGCGAGACATGGGCTGCATGATGAAATCTGTGATACAAAGGTGACAAGAAGATTACATTGTGGACATGAAAGGGAGATGTTGTGTTCAGACAAACCAGGTGAGGTTTTTTGTGATGCTCCTTGCGAACGTCTCCTTCCATGTGAACACCTTTGCACAAAAAAATGTGGCGACGACTGCTCTAGCTTCAAATGTGCCGTCAGAGTCCAGAAGCTCTTGGCATGTGGCTCCCATAAAATTAGTTGTCGTTGCTCTGATGATGTGTCCCAGATGATTTGTCCAAATGGATGCAAGCGGAAATTGTCTTGCGGGCATAAATGCCCTGGTAAATGCTCTGAGGATTGTAGTCAGTTCAAATGCCAGAAAGTGGTCGTGAAACATCTCAATTGTGCAGGAAGGCATTCTCTCAAAATGCCTTGTAGCGATGATCCCAACACCGTAAAATGCAAGGAACGCTGCAGCAATAAGCTAGATTGTGATCATCCTTGCCCGGGCCTCTGCAGCCAGAAGTGCGGAAGTTTAAAGTGCATGCGAAGAGTGGACAAAACATTTCCTTGCGGACACAAGGAACCACTACAGTGCTTTCAAAGCAAAACAGCGACCTGCAAGGAACGTTGTCGCCGACAAAAGAGCTCATGCAAACATATTTGTAAAGGGGTCTGCGGCGAAGTTTGTTCGAAATACCCCTGTGATGTAGAGGTGACAAAAACCCTGCCGTGTGGTCATAAGATTAAAATGCCTTGTAGTCGCTCTGTGGAAGATGTGCAATGTGCTGCTGCATGTGAAAAAACCTTGCCATGTGGTCATCAGTGCTCTGGAACTTGTGACGATTGCCAACAAAGTGGTTCACATGAGTTGTGCGAACATCCATGTGGTCGCTTGCTTGTTTGTTCGCATCGCTGTAAAGCAAGATGTAGTGAACCTTGCCCTCCCTGCGACAGAAAAAGCGACCGACGCTGCCCTCACGGGCAATGTAAAAAACGATGTGCCCAGCCGTGTGGCCCGTGCAGAAGACCGTGCACCTGGAATTGCCCTCACTACCAGTGCAAAAATCTCTGTGGAGAGGAATGCGATCGCCCTCGCTGTAATGCTCCCTGTCCCAAAAAACTGCCTTGTCGCCACCCCTGTATTGGCTGTCTTCAATGCTAG

Transcript

rna-XM_020775576.1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000967	Domain	Zinc finger, NF-X1-type	Interproscan
IPR034078	Family	Transcription factor NFX1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12360	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15683	NFXL1, OZFP; NF-X1-type zinc finger protein NFXL1	-	Ubiquitin system	ko04121	deepkoala