Detailed information of XP_020631237.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_761:851224...863637
NR annotation: XP_020631237.1, saccharopine dehydrogenase [NAD(+), L-lysine-forming]-like [Orbicella faveolata]
Species Orbicella faveolata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q09694Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lys3 PE=1 SV=2
P43065Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=LYS1 PE=3 SV=1
P38997Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=LYS5 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001821 (this species only)

 Pfam domain
No Pfam domain signature was detected for XP_020631237.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR007698
all species →		DomainAlanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domainInterproscan
IPR027281
all species →		FamilySaccharopine dehydrogenase [NAD(+), L-lysine-forming]Interproscan
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR051168
all species →		FamilyAlpha-aminoadipic semialdehyde synthaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11133
all species →		SACCHAROPINE DEHYDROGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004754
all species →		Molecular Functionsaccharopine dehydrogenase (NAD+, L-lysine-forming) activityInterproscan
GO:0009085
all species →		Biological Processlysine biosynthetic processInterproscan
GO:0004753
all species →		Molecular Functionsaccharopine dehydrogenase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0019878
all species →		Biological Processlysine biosynthetic process via aminoadipic acidInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00290LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming)EC:1.5.1.7
Lysine degradationko00310deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_020631237.1 across 70 RNA-seq samples of Orbicella faveolata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

70Samples
3TPM > 0
4Conditions
14.9Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · control.pH_high.temp 21 1 0.71 14.88
holobiont · low.pH_high.temp 19 0 0.00 0.00
holobiont · low.pH Control.temp 16 0 0.00 0.00
holobiont · control.pH Control.temp 14 2 1.31 14.24

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (OFAVE_TPM, StringTie quantification over 70 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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