Gene detail

Detailed information of XP_020631605.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_773:3906055...3920687
NR annotation: XP_020631605.1, polypyrimidine tract-binding protein 1-like [Orbicella faveolata]
Species abbreviation OFAVE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_020775946.1

CTGAGCCAGTTTGTGGTGAAGTGTGAAAGAAACATCTCTAATCAAGACAAATGATAGTTGGCAAAGCTATATCCTGAAAGTAAATATCTTTTGAACATGATGGCACTGCAAAAGGAACAACCCCAAATGCAACTTGACTCATTAAGAAAATATGGTAATACAGTGGtatcccgatttctcaaacccgtTATTTTTCTCGCAACAACTAGAGCCAAAAATCATTTCCCTCCCCTCAATTGAACCCTGTAATTTTATCCCCAATATTTTGAACTCCCCAATATATcaaatcaatttttgtttcccttggaggttcaaaaaatttgaaattcaactGTAGTAGATACAATGTTTAACAAGCTGTACCAAAACTGATTTGAAGTTTGTTTTACAATAGATAACATGAAAAAAGAATATTACCCAGGTCTGATGTAATATTACAGCAGTTCTCAATTGCACATGACCTTCAGAGCAAAATGTCTAAACAAAAGGTTGAGTTTTGGTGGATGTCAGTCATCTCTGCCACTTTGCGGAAAGCCTAGGGGCATGTATGCACAGCTTGTTTGTCAGGGAACTTGAGAATGTACTAGTTATCggggccacccaaaatttaatagaGGTAGTCTCGCTTTGTTTTAGAATAGGCGATGACAGATCAGAGTCCAAAATAGAAATTgaccactgaaaaaaaaacattaaaacaaccgtttattattgtcttcatGTGATTCCATGTTACCTTaaagcttgtttgtttttgagtagATTGATGTTTCTACTAAACCTCCTGTAAATTCCCAGTGTTTCCACCACATTTAAgcagccacctcccatttccctgagggtggccaCTAAATAGGAATTTGACTGTATTTTGTGCTCCTTTTTGCACTCGTCTAAATTGATTTCATTCAGTCTTGCTTTAACATCTTTTTCCCCTTTTCACTGTTGCAGCGTACAGCTGAAGATTTACTTAATATGACAGGTCTTATGGGCGACCAAAAAAAGGCAAGATTTGAGAATGCTCCATCCAAAGTGATCCACGTCAGAAATGTACCAGCAGATGCTGTCGATACAGAGttgCTTGCTTTGGGGCTGACATTTGGGCGAGTTAAAAATGTACTGCTCTTGAAGTCCAAGAAACCCCATGAACCTACCCAGGGTTTCATTGAAATGGAAGACAAAGAAACTGCCTCCACGTTTCTAAATTATTACTCTCATGTTACACCAACCATAAGAGGGCAAGTGGTTTATGTGCAGTATTCCAATCACCCAGAGTTGAAAACAGAACCTTCACAGCATTCCTCAGGGACGTCTAAAATCATTGCTGCCGGCGGAGACTTCAACACTCCATACTCAGCAGATGGGCAACAAGCAGCTGTTGCAGCAGCTGTTGCTAAAGGTGTTGGGAAAAGCAATGTCATTAGAGCAGTGATTGACAAGTTGTGGTACCCGATAACAGTCGAGGTCCTCTATAAGatattttccagtctggGAACAATTCTAAGAATTGTCACCTTCACTAAAAGTGGCCAGTTTCAAGCCCTTATAGAATTCAGCAGCTCTAGTGAAGCTGAACTGGCAAAATTGACACTGGATGGACAAAACATTTACAATGGGTGCTGTACATTGCACCTAGAGTACTCCAAGTTAACTACATTGACAGTCAAATACAACAATGATAAGAGCAAAGATTATACTCGTCCTGACCTTCCATCAGGTCCAAATGAAAATCCTTTTGGCGGAGCTGACATCGCTAGTTTAGCTGCTCTTGCTGGTGGCGCTGGAGGTGGTGCAAGCTTGATGGGAGCTCCAGCACTGTTGAGTCTGCTTCCACAAGGAGGGCTGCTACAAGCAAATTTCCTTGCTGCCACAGGTGCAAGAGGAGGAATGGGACTAGGGACTCCCGTTGTTCTCGTCAGCAATTTGAATGAGGAGAGGATAAACTGTGACATGCTTTTCACTCTGTTTGGTGTGTATGGTGATGTAGTCCGTGTTAAGATTTTGTTTAACAAGAAGGACACAGCCCTTATTCAGTTCAACTATGTTCAGCAAGCTCAAACAGCTATTACGCATTTGAGTGGAGTCAAAGTTTATGGGAAAGAAATCAAAGTGACATCATCAAAACACAACTCAGTTTCAATGCCTAAGGAAGGAGATGAGAACAATCTAACAAAGGATTTTACACATTCACCTCTACATCGCTTCAAGAAACCTGGATCCAAGAACTTCCAGAATATTTTCCCACCAAACAGAACGCTCCATGTGTCAAATATCCCTGAGAGCACCACAGAAGAAGAGTTGATAGATGCTTTTTCTGCGGCAGGAACAGTAACAGAATTCCGCTTCTTTCCGAAAGACCGTAAGATGGCTTTGGTGACATTGACATCAACAGAGGAGGCGATTGACGCTCTTGTTaaaatgcACAACTACAAAATCACAGAATCGAATCATCTCAGAGTGTCATTTGCCAAGACAAGGACATCTTGAGTGTGGCAGACTTCTCGCGACACTTcacttctctttctttcttcttattCAACTTCGTTTTCTAGTGAATAGCTTTTGCTTCCTTACCTTAGTTTTAGTCATGTTGTACTCTTTTGCGTAATGCTCACTCTTGCTTGCATTTTCCTCCAATCAAGTTCAGGAGCATTCCAACTGTGCATGTGCATTTTATGCCACGCTAAATTGCATTCACTTAATGCACATAATTCATCTTCAGAATTGTGTTCTTCCAGAAAACTGACTAGCAATGCTTCAAAATCCAATTTCTTCCCCTTTTCACATTTTCTGCTCCACTTCACATGTTACAACATTTTCAAGTAGTTGTagatagagaaacaccaaaaTAGGAAAATGAACAATTACTAGAAATATTGAACTTCATTTTGTATTATCACCTTGCCAATTTGTATCTGAgggaaatgttctttttttgtggaaaGAAATGTTAAGAAAAATCTATCTATCAGTTTTGTTGATCTGTGTTTAAATAACCTGTTTAGGCCTAATCAGTGGTCTACTTGTAAATTCGTCTTGTTGGCATTGGCTTTAGAGAAAACTCTTGACATAAAGTTCCAATAATGAACAAAATGTACTGACATGGTCATGGAGAAATTATATCTTGGTTgctgtaaaactgaaaaagtgtGAGGGTTCTTTTACTGCTTTATTATTTAGAATGAAAGATAATGCAGAAACTTGAGTGTGCCTGTAGTTTGTTGCCAAGTCAGGTAGCTAACTATCACAACAGGCATTCAGTTAATGATTGTGTTAATTTCATCAGCTCATTTGCAATGGTACTTTAGGAGAAAAGTGATGATAGAGTGGTTATGATGAGCATTTCTAAGTGACCATGCTATTgttaattgaaagaaaacccatAATGtggattttattttagttctggTGTTTTGACAGTTTCAGTCTCCCAAAGATTTTCCAGGCAATGTTACGTCTGAGTTTTATTTCCAGATTCTTTGTTCAGGTTATAAGTTAGGgtttaattgcttttttcctagtgtttcaaaattttgtgaaattatgTGAGGATGGACACAGGAACATTTTAAGTAGTTTTCAAGTGACTGctaataaaccaatcagagtcCTTGGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29099	Polypyrimidine tract-binding protein 1 OS=Sus scrofa OX=9823 GN=PTBP1 PE=2 SV=2
P17225	Polypyrimidine tract-binding protein 1 OS=Mus musculus OX=10090 GN=Ptbp1 PE=1 SV=3
Q00438	Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ptbp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005087 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13893 all species →	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF11835 all species →	RRM_8	RRM-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR021790 all species →	Domain	PTBP1-like, RNA recognition motif 2	Interproscan
IPR006536 all species →	Family	HnRNP-L/PTB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592 all species →	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_020631605.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.