Gene detail

Detailed information of XP_020632792.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_87:985138...989617
NR annotation: XP_020632792.1, uncharacterized protein LOC110069613 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020777133.1

ATTCCACAGCTCTTAAAAGACCTCTTTACCATCTCCTCTGGAATCTCTTGCCATGCTTCTTTAATCCATCAAAGGACAAGGTTTCTAGTTGGCGCCTTCTTCTTTCCTGCCGGGGTGAACTCAACTGGCCCGGTGATCATCCACGCCAAGTACTTTTTCTGGAGGTGATCTTTAAATGGCTTATTCAGGCATTTATTCAAGGGAAAACTTTTTGATCGATTTCGCTAATAAAAAATCAGTTGAATCTACACAAAATGTTTATCCGATTTGACATGAAGCAATGAGTACTCACCTTGCTCTCTTTGGTCTGAAAACCATTCCAACATCTGCTGGTCTAGCTCTGGATACTTTGGAGTGAAGCGGCCGAACGTTGTTCGTTTCGCAGACATCTTCAGCTCGCCGTTGAAAAGCTTCGCCTGGTCCCTTCTCCATCGACAAACCATAATCTCATGTGATCTCTGAGTTGTTTTCAACAGCCTCAGCTTCAGCAACAACTTTGAGCTTAAAAGCCATGTTGTAAGAAGTACAGCGAACTTTTGGCAAGATGAATACGATCACGGACGATATGTAAACTGATAATTTCGATAAGCGTTTGTTTGAGACTTAGTCTGAATGGTGGAATTTGTTATGTTCAGCTGTACTTATAGACTAGTTCGGATCAACTGATATTCACATTCTCGCTGATTTGCTAACTGTTTACAATGAACTTTTGAATATTCATTTGGTTGTCTTTAATCGTTCAACAATCAACATATGTTTCCTGAGAGGGATGCTTCAAAGGTGAAATTTTTCTGCGAAACTTTGGTATCGGCTTATAGCTGGGATCGGCTTATAGGCGAATAAATACGGTAAAGCGTTATATACCATATTATAACTCGTTTTATTCTCCTTACTAACCTTTTATTTGCGCTCTACAAGGAACAGACATCACACTACTAAACTAATCAGTTAATCTCCATcgttttgcttcattttcccAGAGATTGGACATCCAAAGTCATGTTCTTCAACCAACAATGACTAGTAGCAAGAAAACCAGAAATTTAATAGCAAATCCGTTACGCCTAAGTCTCCTGGAGCGTTTGTATAATGAACTACAAATTTCACTCATAACTGAAAAGGtgtcaaacaaaattacaagcaAACTAACTTTTCTAAAGTTCACGTTAATTTTAGAAAGTGTAGATTTTGTTCGTTGTAAAATAAGGTATTGAAACTGGAACAAACTGTACAATGAAATGTTTTGAGTTGGTCCTAGGACATAATTATTCCAGGAGATTCGCTGCCTATTTTCTGCTGTACTTGACGCCTTCACTGACCTGCCTTTAAGGCACTTTATATCGGCAAGGTTAATCCTGAATTTGTTCAATGCCACGCAAATGACCAACTTATGCCCAAGACAACTAATTAAATAAGGCCAGGTCCATTTGTATCAGTTTTCGCTTAAGAATGCAACTTTGTTGTACAGAAAGGGAGCCATCATTATATAAATGACATGAAAAGTGTGTCTTTTGGAAATAGACTAATTTCACAGGGCTGTGAATGACACTGCTAATACTGAGAACTACTCAAGAAAAACTGCATTCTCAAAGAAAAATGGTTGTGTGAggatgaagaaagaaaatcccTATACCAGGCTTATCAACATTAGCTTACAATTTTAATGATGCCGTCTGCCATTGCAAGCGTAAGACACAGTTCTTATAATGCCACTGCGCCTCTTTTCAGTTCTTCACGATAGAGAATGCCTACTGTGTCCACGTCCTCATTGTGCCATTGTATTTCTCCATCTACCAGCCCAGCTAAAACGTTGTGCCTTTAAGTTCCTTCTCTGTCCACAACACTTTCACTTTGCTTCCAACTGCCACAAAGTCACTGGCCATGTTGTTGAaagattcttttattttctccagAACTTTACGATTTCGTTGTGAGCGCAGCCTTGCAAAAGAATCGGCTGTCATTGCTCTTTTTGTACTTGAGCCATTTCCGAATTTCTCTGAAGCCTGGAAAGATTTTCTGACAGATTGCATCTCTTTTTTTCcagaacgattttttttctagGGAATCAAGGGTTTCAGTGACACTACGTGATTCTATTTTTTGCGGTGGACATATCGTTTTCTTCTTGGCACTTGCTGCTTCCCTTGTCGTCATGAGTGATGTTTCATTACTGGCGTTCGCTCGCGTTCTCATCAATATACCTtgcctgttttgttttccttcaacGCCAAGCAATTCTTTGAACATTGAAATCAGCTCTACCAGGgcttttctctctcttttgaATACCACTTGCTGCTGTCCACATTTCAAAGTCCAATGCGAATAATTAGCTCCTCCTTACTTCCAACACTTAGGATTCTGTGATGCAAAAAGACTGCCCTTAGGTATCGAACTGGTTGTTTATTGAACTGACTCACACAAGAAGGGACATTGCTTATAATTCCATCATGTATAAGGgatggcgaatggtaaatgcgagacggcgagactagcatttttctttgcaagcctgagacattttgaccttttagattgcgagacacagacttcaaagtgttttgagtgcggGCACAAGAccttcagactcttaaaattcaagCTCCAGATTTGGTTGAGAGCTATGAGAatgagctagaatgagcttgcaCAAAAGTCTTACAAAGGAGCCTTTTGTTGTAAACCCTCGTACAAGACATCAGACCAGAAAATCTGTCAACAGTCAATGAACTCTATTATTTTCCTGGCCATGACCTAATTTCCAGTCAGGAGGTTGCGCTTGTCGTTTCCCTTTGATTTTTTTGATGCTGTTGCGGGAAATGAGCACGCGTTCACCCCCCGAAAAGATGGCTGGACTCGCGAATGAGACATTGTTAATTTCCACCAATCAGAAGCTTGCTTGCCTGGATCGAACAGGCAGAGCAGGCagcataaattattttttcttggaacaaatttcaagatggcggatgcgGACAAACTGTTTGACTCTGCGTGTAATCTGTTGTAGAACGTTTCAAAGTGGAAAACCTGAAAGATTTGCAACAGAAAGCATTACAAAAGCTAGAAAATGGTGAGGACATATTTGTAATTCAACCGACTGGATCAGGAAAGTCACTTGTTTATCAGTCTGCGCTGATGGTTTTTGACATCGTCAAGAGGACAACTTTCAAATCCACTGCTGTTGTAATCTCACCTCTGACTTTGCTAATGCAGGATCAAGTGAAATTCCTTACGTCAATAGGAGTTACAGCCGAGTTTATTGGTGAAGATCAACAGGATGACGAGGCCAAAAAGGCCGTTGAACGTGGCGACTGCCAGATCGTGTTTGGATCACCAGAGTCATTTTTAAGTTCCGATCGATGGAGAAAGATGTTGTTGAGTAAGGTGTATGAAGAGAGATTGTGCCTCACTGCTGTAGACGAAGCGCACTGTATTTCGCATTGGCCAGGAAAGCTTAACAATGAAATGGATCTGCTCAATCATAAAAAAGTTACCAGTGATAGCCCCACTGCAACAGCCACAACGGAAACAAGACTTCAGATTGTGAGAACATTGGAAATGAAGAATCCGGCTTTGATTGTTAACATCCCCAACAGGCAGAACATCTCCTATGGTGTGCAAGTTATCACTCCCAACCCTTCTGTGACATTTGCAAAAATGGTGAGTgatttaaaagttcaaaagacTGCATATGAACGAACTGTAATATACTGTCCCACAATAAAACTTACAACCCACTTGTATGGCTTTTTTCAAGCCGAACTAAATGAACACATTTATACGGATGAAATTCAGGATCCAAGGAAAGGAATTGTGGAAATGTTCCATGGCAGAAGTGATGAACTTAACAAGTTCATGGGAGATAGTGATGGTTGTATAGTGATGGTTGTGTGTTGATCGCAACCATTGCCCATGGGATGGGTATTGATTGCAAGGACTTAAAAACTGTGATTCATTATGGCCCATCATATAATTATGAAACATACCTACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006268	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03257	EIF4A; translation initiation factor 4A	-	Exosome	ko04147	deepkoala