Gene detail

Detailed information of XP_028391089.1 in Dendronephthya gigantea

Genomic Location: NW_021163015.1:2352574...2358289
NR annotation: XP_028391089.1, lysyl oxidase homolog 2A-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028391089.1

ATGGTAGCGCGCAGCATTCTTTCCTTTCTGGTCGTTTTATTTTGCGTATATTGCGCGCAAGGCCGCCGCCAGCGAATACAAGTGCGTCTGGAAGCTGGCCCTCAGCCGTACGCTGGTAGAGTTATGGTTTATTATGAGCGCACTCGTAGTTGGGGCTACGTTTGTGACAATGGTTGGTCAAAGAAGAACGCCGCAGTCGTTTGTCGCCAACTCGGTTATAAAGGCGTTGTGTTGGCTACGAAAGGGAAGTTCTATGGCCGTGTAAATTATTACAACGTGAAGAAGTCCCGGTCACGATCGAGAACCACTCAAGCAAGGACTCGTATTTGGTTGGACAGAGTGCAGTGCTCTGGAAACGAGTTTAATCTTGGCTCTTGTGGACACAGCCGTTGGGGTCAAGTTCGCTGCAACCGAATGCGTCTGGCAGGAGTGATGTGTGATCCCGGTAAAGAGATCTTGATAAAGACGCCTCCTCTGTACAACACGACGCGACACATCAATATAGAGAAGTTTAAGCTCAATTTGTGGCCGGAAAACACCACAGAGGGAATAATCACGGAAGGCTTGCTTGTTGTAAAGTATGAAAAGGGAAACACTGGCGTGGTGTGCAGCGATGAATGGGGTTTGAAAGAAATGCGTGTTGCTTGTGGTGAACTAGGATTCACTCATGCTGTCGAGACCAGTATTCAGACAAGTATTGATCAGATACGAAGGAAATACTCACAAGACCTGGATTTTCATCTTGGTAACGTGGAATGTGATGGGAACGAGGCAACGCTGCTTTCTTGCAAGAGTAGTGGATTGATGAAACAGAACTGCTCGAGTGGTCAAGCAGTATGGTTGAAGTGCGAAACGAGGGCTCCACCGTTTGCACATGCGCGACTCCGTGGTGGTATATATGAATGGGAAGGTCGTATTGAGGTGCGCAGAAGGATAACTTGGAGCACTCTCTGTGATAAAGATATGAATATCTACACAGCTAACGTCATCTGTCGGTCGCTAGGATACGGAACAGCTAAAAACTACGCCTTGGGAACCGTGTATCCTCACGAAATGGAAGATGTGAAAATGTACGAGTCGATCGAATGCAATGGAAAAGAAACGTATTTACAGAGCTGTTATTGGACAGAAAGGAAGAAGAAATATCCTTGCCGACATTACTCGGACGCAGGCGTACGATGCAACGTACCAGAGCAGAAACGAAAACGAATGCAGATTCGTTTACGCGGTTCTTTCCACCGCTCCATGGGCAGAGTGGACGTTAAGATCGACGGGAGGTGGGGTGTTATCTGTGGTGAACAATGGACGATGAGGAACTCGATGGTTGTATGTAAACAGCTGGGTCTTGGTTACGCTGGTGCGAACTACAGCACCCGTCACTTCGGTAGAACTGGCAAGATACTTCTCAGTGGGATCACGTGTCTTGGTCATGAAAACTCGTTGGACGAATGCTTGCGACACGAGAACATCACGTGCAGGAAAACAAAGCGTATAGCTGGTGTGAAGTGCACAAAAACCGCTGCTGACTTGGTGTGGGATATAAAAGAGCTCGCCAAGACGATGAGCGTCCGTCGTTTTCCGATCGTAGCCTTGCGATGCGCTCACGAGGAGAACTGCCTATCGTCGAGCGCGGACGCCATGTTTAACGACGTGTCGCTGAGACGAGCATGGTTCGGACACGCCAGACGACTCATGAGGTTCTCCGCGAAAGTTCACAACGTCGGAACGGCGGATTATCGACCTTACCTGCCCAAGAACGCCTGGGAATATCATACGTGTCATCGACACTACCACTCGGACGAAGAATTCGCTTTCTACGACTTGATAGATCCGCACACACATCAGAAAATCGCCGAGGGCCACAAGGCAAGCTATTGCTTGGAAGACACAAAATGCGACGAAGGAGTAGACCAATTCTACTTCTGCCGCAACGGGGGTGATCAGGGGATATCGATCAATTGCCATGATAACTACGACTACACGTTGGATTGTCAGTGGATTGATGTCACAGATCTGACGGTGAGAGGACGATCCTACAAACTGCGTCTTGTTGCCAATCCGGGGTTAAAAGTACCCGAGTCAGATTATTCTAATAACGCCGTCCTCTGCGACGTAATTGATCGCAGAAGCCGAATACAAGTAGGAGAATGCGTTGTGGAATCATGCGAGAGCGGCGTTCGTTCAAATCACGGCAATGGCAACTTCGCTTGCTGTCGATTTCCGTTCATTTACGACGGAAAATCACGTGACACGTGCGTGCTGGATGACAAGACAGGACGATTTTGGTGTGCGACTAGCGAAAACTTCGACAAAGATAAACTATTTGGTTATTGTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
B4F6N6	Lysyl oxidase homolog 2 OS=Xenopus tropicalis OX=8364 GN=loxl2 PE=2 SV=2
F1QQC3	Lysyl oxidase homolog 2A OS=Danio rerio OX=7955 GN=loxl2a PE=2 SV=1
F1RD85	Lysyl oxidase homolog 3A OS=Danio rerio OX=7955 GN=loxl3a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040	fn2	Fibronectin type II domain	Domain	Interproscan
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF01186	Lysyl_oxidase	Lysyl oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR000562	Domain	Fibronectin type II domain	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR001695	Family	Lysyl oxidase	Interproscan
IPR050912	Family	Lysyl oxidase-like protein	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR036943	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0016641	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	Interproscan
GO:0004720	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0018057	Biological Process	peptidyl-lysine oxidation	Interproscan
GO:0030199	Biological Process	collagen fibril organization	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00280	LOXL2_3_4; lysyl oxidase-like protein 2/3/4	EC:1.4.3.-	Enzymes with EC numbers	-	deepkoala