Gene detail

Detailed information of XP_028392373.1 in Dendronephthya gigantea

Genomic Location: NW_021163017.1:2277826...2295935
NR annotation: XP_028392373.1, ankyrin repeat and SAM domain-containing protein 6-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028392373.1

ATGGCAGCACTGAAATTCATTTTGGCCGTTACGAACGGCGATTTGGAGGCCGTACAGTTGTTTTTGAACAAGCAGGAGAACAGCGACCTCGTAAATTACTCCGATGAGTGTGGAAACACGCCGCTGATACACGCCAGTGCGAATGGCCGCGAAAATATCGTCAGATACTTAATAAGCAAAGGGGCCAGGTTGAAGCCTTCTCTCTCTTGTAACGACTACGGCTGGACGCCGCTAATGGTCGCGTCTTATTATGGACACTTTCAGATCGTCGCTGCGTTGCTACAAAGCATCTCGGACCCCGGCGAGGTTACCTACACCAACCGGCTGGGCTCTACAGCGCTGCACTGCGCGGCGCGTTGCAATCACATTCAAGTCGCCGAGCTTTTGATTTCGAAAGGCGCTGAAGTGAACGGTGTGGTAGACGAGAGCCATCTTTTGGACAGGAATTGCAATAGATCGCCGCTTATGGCCGCCGTGCAACACGGACACGACGAGATGACACGACTTCTGATTTCGCAAGACGCGAACGTGAACTGCGTCGATCTTCTTACAAAATGGACGCCGCTAATGCTCGCTGCGTCGAACGGTCATAAGACTGCTGTTACGATCCTACTAGAAAACGGAGCCGACGCGAATCTCGTCAATATCTGTGGGCAAACTGCTCTGGACATCTCCAGGCAGATGCGACGAAAAGATGTCGAGAACGAGCTGGAGCCTGTCACGAAGCGACGCATTTCTGACCCAGGCAAGTCGCTGCCCAGAAAGATTGATCTTATCGAAGCTGCCAAAGAAGGAAGTTTAAGGCAAATACAAGAACTCGCGTTACAAAGTGATTTTGATGTGAATGAAACCAAGGAAGACGGTATGACGTCACTGATGTGGTCAGCGGTGAAGAACCAGTTTCGCATTGCCTTATTCCTTATCCAGAAAGGAGCTGATGTTAACATACGAGATAATCCCTACGGTTGGACAGCCTTGATGCACGCTATCAATAGCAACCACAAAAGTATAATTTGCCTTCTGATTTTAAATGGTGCCAATATACAGTTAGAGTCACACGATAAGACGATACCATTTGACCGAGCAACCGTGGTTGGTGACAGCGAAGTTATTAGAATCTTGGGTGCAGCAAGTAACATCAACGAAGTCGATGTCTGGAAGCAAAATTCCAGCTGGGCTTTTTTAGTCAAAACCTTGCAGGAATGCCTTTTCCGAGACAAGATTGACATGAAAGTCAGATATAATTCCGCTACAAAAGAACTCCAGTTTTTGGACTTATCCGATAATAACAGGCAGGGCTTCAAGATATCGTGGACGAAAAGAATAAACAAGTTGCAGTATAATTTCAACCGAACAATTCATTTGTTAAACAAACGTCAACCAAGCAAACCACAAACACTCAAACCAGTGTCACACGAAGTATTCAGTCGTCTGCCACAAAATATAGACGCTACCAGCAACCCGAATCTCTTGACCCGAGGAAACGATATGAATACAGCTCTTTTAGAATCGTCTACAATCGAGCTTACGGACCCGAGAAAAACCACTCTGTTGCCATTGGCGGGACCATCGGTGAATGAGTGGCTAGGGGAAATAGTTACCCCCATCGTTCCTCCTTTCACCCCAACCACGACTTTGGACTTCAATACGAAGCAAAGAGAATTGACAGATTCATTATTGTCCACATCACCTCAGGACAGCGAGTATTCTTATGGGTCAAAAACGAAGGATCAGATCTCTCCAATTTCGTCTCGTCGTAGCAGTGGACAGAGTCCTGAATCATCTTTCAATTTATCACCTGTGCAAAGCCCTGGAACGTCTTTTAACAGCGGCCCAAACATCAGAAGTCCTCGATACAAGCTGGACCCTTGGTATTCCGCACAGCGAAGATCGTCATCCTCATCATCTCTTCCCGGTAGATCTCCTTCCCAAAACTCGCATTTCTTCGCGCCCAAAGCAACGAACAAATTTCCATCCAGACGAAAATCCAATTCCCTACCACGAATTGGTCGTGGCACCGTCGCTCCGGTTCAAAGCTCGCGTGGTCTTACCAAAAGTGAATCAGATGAATCAGAAAAGATGAAAGATTGGTTGGAAAAGCTCTCGTTACAACAGTACACTCCAATATTAGAAGAAAACGAGATTGATACAGATACCTTTCTGACGCTGAACAAAGCAGATCTGGATCAAATTGGAATAAAGCAAACTGACGCACAACGACAAATCCTCGCTGCTGTTCAACAGCTAAGGAGGAAAAGGGAAAGGAACCCTGTATTAATGAAAGCCGATGCCTGGGCGTCGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q02979	Glycerophosphocholine phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GDE1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24157	ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21415	ANKS6; ankyrin repeat and SAM domain-containing protein 6	-	Cilium and associated proteins	ko03037	deepkoala