Gene detail

Detailed information of XP_028393619.1 in Dendronephthya gigantea

Genomic Location: NW_021163020.1:2958717...2965289
NR annotation: XP_028393619.1, RNA-binding motif protein, X-linked-like-3 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028393619.1

ATGGATGCTGAAAACAGTAAGGATGGCAAGGAATCAATCCCTGCTCCCAACCAGAGCAGCAATGATGATAGTGCTGCATCAGTTGAAAGTGATTCAAATATGACATCTTCGGTAGAACCAGTTATGGCGACCTCAGAAGAGCAAAATATGTCATCCTCAGTAGAACCAGTTATGTCATCCTCAGTAGAACCAATTATGACGTCCTCAGAAGAACAAAATATGGCATCCCCACCAGAACCAGTTATAGCGTCCTCAGTAGAAGCAGTTATGGCATCCTCAGTGGAACCACTTATGACATACTCAGAAGAACCAGTTATATCCTCAGTAGAACCAGTTATAGTGTCCTCAGTACAAGCAGTTATGGCATCCTCAGAAGAACCAGTTATGGCATCCTCAGTACAACCAGTTATGGCTTCCTTAGGAGAGACAGATATGGCATCCACAGAAGAATCAGTTACAGTATCCTCATTTGAACCAGGCATAGTACCCCTAGTAGAGCCAGGTACTATCAACGATGTTGGTGGTGTAACTGACCAAAATGATGGAACAAATACTAACCAAACCATTGACTTAGCACCAGTTGTGAATAAAGAACATGAATCTGGCCAAATCACCACACCGGATGAAAGTGATAACAATATGTGTAAGCAAAATGATAGGGAGGCAAATGTTGTGGATGAAAACAAGGCTGTTGTGGTTAAAATTGAGAAGGATGATGATCACAACAATGATAATAATGATGACAGTAGAGAAGGAGTTAAAACCTATTCTGGTTACGTTCCAATATCCCAAGAAATGTTTGATTGGGAACCACCAACATCTTTGGATAACCAGAACAAGTCTACTCCCCCACCTGACACCAACCAAGGGCAAAGTCATGATGGCAATCCTGATAGAAACATGTTTGCCAGAAAGCCTGTTGATGGCTTGGTGTACACCGAGGTTGGAGAGAAAGCTCGACCGACGCCCTATATTTATGAGATAAAGGCGAGAAAGTTTGAAAAGAGAAGGAAAAATAAGCTCTTTGTTGGTGGACTTGTGTTTGAAGCTACAAAGGAGTTTCTTTATGACCTTTTTGAGAAATATGGAGAGCTAGAGGATGCATGTATTGTAACAGAACGAGGAACAGGCAACTCACGTGGGTTTGGGTATGTGACCTTTGTTAATCAAGATGAAGCTGAGGAGGCAATAAAAGCCATAGATGGACTGCGGATCCATGGCAAGACTCTCTGTGTAGAATTTGCAGATGACCCCAAGAGCTCCCCTGGCAGAGGGCCTTCAGGACGCAGCCGAGGACCCTCTGGTCGTGGTCGGGGTCGTGGCTATGGCAGATACTATGACATGGACAGGTACCCCAACGAAGATCCATACTATTATGACGAAAGACCTGACCCATACTACAGACATTCAAGGGATGATCCATATTATGACTATCCCTCTCCTAGAGATTTTTACCGCCCCCCACCTCGTGACTACGACCGTCCCCCACCTCGTGACTACGACCGTCCCCCTTCTCGTGACTACGACCGTCCCTCTTCTCGTGACTACGACCGCCCCCCTCCACGAGATTATGGCCGACCACCACCACGAGATTACGATCGCCCACCTCCTCGTAGCTACGACCGACCTCCTCCCCGTGACTATGAGCGCCCACCTCCGCGAGACTATTATCGTCCACCTCCCAGAGATTATTATGATACACCCGCCTATGATCATCCTCCTCCCCGCGACTATGGTGACTACAGAAGGCCACCTGCCTCATACGATGAAGATTACCCCCCTGCGCCTAGACGCGAAGACAGGTTGAGAGATGTAGACGTTGCTCGATTACGTGTGGACAGGGAGAAAGTGCGTCGTGAAAAGTACACCAGCGTGGATCAACAAAGATTGCTGACCAGACAGAAAAAGAAGCAACCGTCGTCGTCATCTAGTAGTTCTGAAAGTTCAGATTCCGAAGCAACCAAAGCGAAAACAAGAAAAAGGCATAGAGTTATCCCGAAGGCGTACATGATAACGGTTTTAAGGCGAAATTTACGGTCGAGAATGTCCCAAAGGAATAAACTGTTTGTTGGGGGGCTTAGCCAAAATGTCACGCAAGATACTCTGTATGAGACGTTCGATAAATACGGAAAAATCGAGGATGCCTGCATCGTCATGGACAGGGAGTCAGGAAACTCTCGTGGGTTTGGTTATGTGACATTTGCAGACCCTGCTGCTGCTGAAGCTGCGAAAAGTGGACTACAAGGATGTCCTATTGATAACAAGGACATTAACATTGAATATGCAAATCCCAAAGATCCTGCCAGGGAAGCAGCTAAACGAAATGACCGCCATGGTGGTGGTGGTGGTGGTGGAGGAGGAGGTGGTTATAGCCGTGGTGGCAGAGGAGGTGGTCGAGGTTACGGTGGTGGTGGAGGTGGTGGTTATGGTCGTGGTGGAGGTGGTGGTGGTTATGGTGGTAGGGGCGGTCCAAGAGGTGGACGTGGTGGTCCTAGAGGTGGAGGAAGAGGAGGACCTCCAAGGGGAAGAGGTGGGCCTCCCAGAGGTCGTGGGGGACCAGATAGACGTGGGCCACCACCCCCTCGTGGGTACAATGATGGTTATGGTGATGATCGGGGATATGGTGGAGGTGATGGTTATGGTGGCAGAGATGGCTATGATGGTGGGTATGGTGGTGGTGGAGGATATGATGCACCACCTCCTAGGCGTGATGGTGGTGGCTATGGTGATAGAGATCGAGGTTATGGTGGGGGTAGTGGTGGTGGTGGTGGCGGTGACCGATATCAGAGGAATGACCAAGGTTATGGTGGTGGTGGTGGAGGAAGTGATGGCTATGGTCAGTCAACAGACAGATATGGTGGCCCTCCATCTGGCGGTCAGCAAGGAGGCAGGCAATCCTACGGTCAAGGACAAGGCCGTGATTGGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
P60826	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1
Q14011	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1
P60824	Cold-inducible RNA-binding protein OS=Mus musculus OX=10090 GN=Cirbp PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051106	Family	RNA-binding and splicing regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48028	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan