Gene detail

Detailed information of XP_028393827.1 in Dendronephthya gigantea

Genomic Location: NW_021163020.1:1998931...2006300
NR annotation: XP_028393827.1, msx2-interacting protein-like isoform X3 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028393827.1

ATGTTTCCATTTAGGCCTGGTGATGAGGGGTACGGCGGTAGACAGGGTGACGGGTATTCAGGGTCTTATGGGTATAAAGATGGTCCACCAAGGAGGGATTATGATAGAGGAGATCCTGATGAAAGAAGCTCGTCAAGAATGATTGATGAAAACCCAGAGTCATTCCGCCGTGTCGCACGCAATCCACCGAAACGCAAGGAAAGCGAGAGTGTCCAGAGCGGTAGTGCGGGCTCAGACAGTGGCAGTGATTCCAGCGGTAGTGGTGATAGTGACAGCGACAGTGAGAGTGAATCGACGACATCAGAGACGCCACGAAATGTAAAGAAACCAATAGCTTTGCAGATACGAAATTTATCTGCGAGATCAAATGACACGACCATAAGAGGTGGACTATATCACGAGTTCAAAAAACATGGAGACGTTGGTCAGATTAAGGTTTTTGGACGGGACAGTAACAGATATGCCATTGTGTATTTCAGACGACCTGACGACCTGGTAAAGGCAATGGAATCTTGTCAGAGGAAAATGTTTCTTGGCTTTGAGATGGACATATCTTTGTATGAAGGTGACGAACAAGAGGAGAGATCGTTCCACCGCTACAAACGCCGAGGAGACAATGGGGGGCCTGGATTCAACTCCGCTGACGACGTCTACCAATTCAACGCAACCAGAACAATATTTGTGGGAAATATCGAGAGGAATACGAATTCAACCGAGTTAAAACGAATGTTTGAACGATATGGGGAAATTGTGGATATTGATATCAAAAAACAAGGTACTAATGCTGCGTATGCGTTCATTCAGTATCTGGATATTACGCACGCTGTCGAGGCTAAGAAACAGATGAATCGAACTCTCGCTGGACGCAATAGATTGAAGATTGGTTTTGGTAAGGGGATGCCAACAAGCACTGTATGGGTTGGCGGTCTGGCGCCAAACGTAACCGAAGACATGCTAGATCGCCACTTCACGCGCTATGGTCGTATCAAGGGTCTGGGACTGGATCGGAAACGAGGCTATTGTATGGTATCTTTTGAGCATATTGCTGGTTCAACGTCCGCGCACAATGATTTAAAGGAAAGGAATCTTTTCGGAAAACGAGTTCGGATTGACTATGCAAGTCGTGAAAGTCAAATATTCTTCTATGATTATCTGGTCAGCACGGGTCAAAGTGAAGGTCGGCGCTATGAGCCCTCCCCTCCGCCTCCTATGCGACCCAGGGGGAAGATGTACGACGAACCTATGCGACCTCGTCATGGTATGCGCCCAGGACCGAAGTACCATCCTTATGATCACGGATACGATCGACCGCCTTTCGTCGATCGAGGTCCACGACCTTATGACGAGTATTTCCGAGGAGGGAGCGGTGGTTACGACAGTGACGATTTTGGTCAAGAACTGCGTGAATACTCGCGAGAACGCGCTCGCGATCGTGAACCTGATCGACGGCCCGAACCCCCTCCCCCTCGTCGGCGACATCATCGGGGTCACCCTGCGGATATGGACAGCGATAACGAGAGGTATTACGGTCGTCCTGAGCATCCCGATGTCTGGCCGGGTGATGGCGGCAGAGAACGTGGATCGCCCGATATGGATCCGAGGGAAGACGGTCATACTCGCAGATATAAAGAAGGAGATAAAAGAAGGGACATGGTGAAGGATCGTGTACAGGAGAGGAGAGTTGATGATAAACGACCTCCTGTTAGGATAAGATATGATAGCGAGGAAGAAATTGAGAATGCCGAACCACCTCCCCCCGCCGAGAAAAAGGAACGTAACCGAGATAAATCTTTACGCAAGAAGCCGATTGATGCGCGAAATGAGGACGAAAATCCCGAATTCTATCCGACAGGATACGACAAGACTTACGATGAGGGTAAAATAAAAAGTGTAGTCGCCAAGCGTAAAGTGAAATCAAAGGACGGGACGTCTGCCGAGGAAGAAAAAGTCCCACCGGAGGAAGTGCCCTTACCACCCGAGGAAGATACTCTCATTCGGAAGGAGGAACGAAGTGCTGATAAAGCAAGCAAGAAGCTAAAGAAGGAAGCCAAAAAGAAACGAAAGAATAAAAAAACACCGGAGAATATGCCTCCCGGGGAAGAACCCTCGAAGAGTAACCCCCCGGAGCCAATAGACTTTGACACGAATGAGAAGAAGTACGATCACGATGCCCAGGAATCTCGGGTGGATAACTCGCGTGTTAGTCCCGAACGCGCGAGAAGGGCTAGAAAGTCAGATGTGGTTATGAAATCGGTTGTCGTGGAACGACCAAGATCACCGACTCCTGAAGAACATTTAACAGCACGTAAACGAGTGCACTCGCCTGAACGCGACGTGGTGTACACACGCATGGACGATATGCATCGCGTGGACTACACGCGTGATGATCGTGTGGACCACACGCGTGGCGTAAAAGGTTCTGGTCACCATGATAATGATAACCGGTATGAGGAAGTTAAGACGAAGAAACAGCGCCCGTCAACAGAAGCACCACCGCCCCCACCTCCACCCCCTCCGTATAACCAAAATGGATCTAGTGATTCCGCCTTCCAAAATTCGGCTGCTCCTCGGAATGCGTTCGTACCGACCTCGTCGCCGACTGTCGAGCCTTCGGTCCCTTCACGGAACACGTTCCAACAACACTCAACAGAAGCAAATCCAAGTGCAACTTCCAGTGGAAACGGAAAACCTCCCAAACCAACTTCCGGCCATCCTTCGCCTACTACTTCTCCTCCGGCCGCTCAAAGCGGAAGTGGCGTGGTACCAAATAGTGACGACACTTTAATGGAACTTTTACGCCGGCATCCGGTGATGTGGCAAGGACTTTTGGGATTGAAAAATGACTCGGCAGCTATTCAAATGCATTATGTATCTGGGAATTCGAAATTGGCCGAATATTCGTTGCCCAAGGCTACTGGAGCTACCGGACCAAACGGGGTCACGCTCCCCCCGATACTGAGAATTGCTCAACGCATGAGAATGGAAATCTCGCAGTTGGAAGGAGTCACAAAGCGCATGCAGTTTGATAACGAGCACTGCTTGTTGTTGGCTTTGCCATGCGGTAGAGATCCGCTTGACGTTCACGCGCAAACGAGAGCTTTGAAAACTGGTTTCATCGCATATCTTCAGCAGAAACAGGCAGCGGGGATTATCAACATTTCTCAACCTGGAAGCCAGCAGGCAAGTTTTGTTCTTCATGTGTTTCCTCCTTGCGAGTTTACTCATTCGCATCTTTCAAGAGTCGCTCCGAATCTTCTCGACAGTGCTACGGACTCTGGACATTTGATGGTCGTCGTTGCAACCGTCTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8SX83	Protein split ends OS=Drosophila melanogaster OX=7227 GN=spen PE=1 SV=2
Q62504	Msx2-interacting protein OS=Mus musculus OX=10090 GN=Spen PE=1 SV=2
Q96T58	Msx2-interacting protein OS=Homo sapiens OX=9606 GN=SPEN PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF07744	SPOC	SPOC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016194	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR010912	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR012921	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13190	RBM15; RNA-binding protein 15	-	Spliceosome	ko03041	deepkoala