Gene detail

Detailed information of XP_028393939.1 in Dendronephthya gigantea

Genomic Location: NW_021163020.1:348485...351420
NR annotation: XP_028393939.1, threonylcarbamoyladenosine tRNA methylthiotransferase-like isoform X1 [Dendronephthya gigantea]
Species abbreviation DGIGA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P4Y0	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis OX=8364 GN=cdkal1 PE=2 SV=1
Q6NS26	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis OX=8355 GN=cdkal1 PE=2 SV=1
Q5VV42	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo sapiens OX=9606 GN=CDKAL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005716 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01938 all species →	TRAM	TRAM domain	Domain	Interproscan
PF00919 all species →	UPF0004	Uncharacterized protein family UPF0004	Family	Interproscan
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006466 all species →	Family	MiaB-like tRNA modifying enzyme, archaea/eukaryota	Interproscan
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR002792 all species →	Domain	TRAM domain	Interproscan
IPR038135 all species →	Homologous_superfamily	Methylthiotransferase, N-terminal domain superfamily	Interproscan
IPR023404 all species →	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR020612 all species →	Conserved_site	Methylthiotransferase, conserved site	Interproscan
IPR005839 all species →	Family	Methylthiotransferase	Interproscan
IPR013848 all species →	Domain	Methylthiotransferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11918 all species →	RADICAL SAM PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035598 all species →	Molecular Function	N6-threonylcarbomyladenosine methylthiotransferase activity	Interproscan
GO:0035600 all species →	Biological Process	tRNA methylthiolation	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0035596 all species →	Molecular Function	methylthiotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15865	CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1	EC:2.8.4.5	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.