Gene detail

Detailed information of XP_028395098.1 in Dendronephthya gigantea

Genomic Location: NW_021163023.1:3101077...3107495
NR annotation: XP_028395096.1, ribosome biogenesis protein TSR3 homolog [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5HZH2	18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1
Q9UJK0	18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1
Q12094	18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04068	RLI	Possible Fer4-like domain in RNase L inhibitor, RLI	Family	Interproscan
PF04034	Ribo_biogen_C	Ribosome biogenesis protein, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007209	Domain	RNase L inhibitor RLI-like, possible metal-binding domain	Interproscan
IPR022968	Family	16S/18S rRNA aminocarboxypropyltransferase Tsr3	Interproscan
IPR007177	Domain	16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20426	RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0030490	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0106388	Molecular Function	18S rRNA aminocarboxypropyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09140	TSR3; rRNA small subunit aminocarboxypropyltransferase	EC:2.5.1.157	Ribosome biogenesis	ko03009	deepkoala