Detailed information of XP_028396050.1 in Dendronephthya gigantea

Genomic Location: NW_021163010.1:1879132...1889767
NR annotation: XP_028396050.1, DNA-directed RNA polymerase I subunit RPA2-like [Dendronephthya gigantea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B8JKD7DNA-directed RNA polymerase I subunit RPA2 OS=Danio rerio OX=7955 GN=polr1b PE=3 SV=1
Q9H9Y6DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=1 SV=2
Q5REE8DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04565RNA_pol_Rpb2_3RNA polymerase Rpb2, domain 3DomainInterproscan
PF04560RNA_pol_Rpb2_7RNA polymerase Rpb2, domain 7DomainInterproscan
PF04561RNA_pol_Rpb2_2RNA polymerase Rpb2, domain 2DomainInterproscan
PF04563RNA_pol_Rpb2_1RNA polymerase beta subunitFamilyInterproscan
PF00562RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan
PF06883RNA_pol_Rpa2_4RNA polymerase I, Rpa2 specific domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007645DomainRNA polymerase Rpb2, domain 3Interproscan
IPR007641DomainRNA polymerase Rpb2, domain 7Interproscan
IPR007642DomainRNA polymerase Rpb2, domain 2Interproscan
IPR007644DomainRNA polymerase, beta subunit, protrusionInterproscan
IPR007121Conserved_siteRNA polymerase, beta subunit, conserved siteInterproscan
IPR037033Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR037034Homologous_superfamilyRNA polymerase Rpb2, domain 2 superfamilyInterproscan
IPR007120DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR009674DomainDNA-directed RNA polymerase I subunit RPA2, domain 4Interproscan
IPR014724Homologous_superfamilyRNA polymerase Rpb2, OB-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0001054Molecular FunctionRNA polymerase I activityInterproscan
GO:0005736Cellular ComponentRNA polymerase I complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03002RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2EC:2.7.7.6
Transcription machineryko03021deepkoala

TOP