Detailed information of XP_028396685.1 in Dendronephthya gigantea

Genomic Location: NW_021163010.1:176148...200801
NR annotation: XP_028396685.1, collagen alpha-2(I) chain-like isoform X4 [Dendronephthya gigantea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P4Z2Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN=col2a1 PE=2 SV=1
Q91717Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2a1 PE=2 SV=2
P02459Collagen alpha-1(II) chain OS=Bos taurus OX=9913 GN=COL2A1 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF12947EGF_3EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR024731DomainEGF domainInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

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