Gene detail

Detailed information of XP_028397823.1 in Dendronephthya gigantea

Genomic Location: NW_021163030.1:742992...743820
NR annotation: XP_028397823.1, sperm-specific H1/protamine-like protein type 2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O17536	Histone H1.4 OS=Caenorhabditis elegans OX=6239 GN=hil-4 PE=2 SV=3
P15308	Protein B4 OS=Xenopus laevis OX=8355 GN=b4 PE=1 SV=1
P06144	Late histone H1 OS=Lytechinus pictus OX=7653 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00538	Linker_histone	linker histone H1 and H5 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR005818	Domain	Linker histone H1/H5, domain H15	Interproscan
IPR005819	Family	Linker histone H1/H5	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11467	HISTONE H1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030261	Biological Process	chromosome condensation	Interproscan
GO:0031492	Molecular Function	nucleosomal DNA binding	Interproscan
GO:0045910	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11275	H1_5; histone H1/5	-	Chromosome and associated proteins	ko03036	deepkoala