Gene detail

Detailed information of XP_028399484.1 in Dendronephthya gigantea

Genomic Location: NW_021163034.1:1419449...1428820
NR annotation: XP_028399483.1, mucin-17-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028399484.1

ATGTCAACACCAGCAATGGCGTCATTGGTTGACCTTGGAAAGCGCCTCCTCGAGGCATCCAAGAAAGGTCAGGCTGACGAAGTGAGCATGCTGATGTCATCTGGGGCTCCTTTCACAACTGACTGGCTTGGTACTTCACCACTGCATCTTGCGGCCCAGTACGGGCACACTACCACAGCAGAAGTGCTATTAAGAGCTGGAGTTAGCCGAGATGCGAGGACCAAGGTTGACAGAACACCTATTCATTTGGCTGCACAACATGGGCATCTTGACATTGTTGATTTACTTATTGCTGGTGGAGCTAGTGTGAATCATACTGACATGTTAAACATGACACCCTTACACTGGGCATGCGACTCTGGCCATATCGAAATTGTTAGGCTCCTGCTCAGAAACGGTGCGAGAATGGACATTGAAAGCAAGTTCAAACACACGCCCATCGACATAGCGAAGCAGAAAGGCTTCAGTGATATTGTTGTTGCACTTCTGGAAGAAGAGGCCTCAGATCGGAGTCGGGGAATAAAAAGACAGAGTCAAACCAGCCTGACACTTGGCTCTATAAAGAAACGGCAAAAAACTCGAAAATTTCCAATGACTGCTGGGTCATGGACCGGAGTTCACGATCCAGGCAGTGGGCAGAACGTTCAAGTATTAAGAACCCACTCGGATTCAATGGCGCCTCTGGTCTCGGCTGCTGCTTTAGCAAGTTCCGAAGAGAAAAATACAAAAAGTTTGAAGCAAGGAACAACCTCGTCCCAGGACTCCAGTGTGTTGGACGCTCTCGCAACTCTGGCGACCGCTACTTTACATCAAACAACGTGTATACCCTCGACCCCTACCAACTCCATCGCGATGGCAATGTCGGCTGTTGGGAGACAAGGCGTCACCTTGTCCCCTTTGACGATACCCCCGAACACACCCAGTCAGGTACTGAGCAACATCACTCCAATAACACCACCCATGTGGGGAAACGTGCCCCCACTCCAGTCTCCCCTGGCCGCCCTCTCGACTATATCAGCGCTATCCCAACCCGCGCAACCTTCACCTCTGAACATTCCCATGCACCAACTTCCCTTCGCCGTGCCAATCGGGTTCAACAGCCAGTCAGGCAGTGCGACTGGTAACCAGCTGATCATCACTCAAGTTCCTATCGCAGGCCATCAGAATGTTACGGCGCCTAGCGCCCAGTCTACCGTTACGGTTTCCTCGATAACAGGCTCAGCTGTTTCTTCTGTTGTCGATCAATCTGCATCCTCGAGCGATGCAACACAATCCAACACTCAAACGACAACGTATCTTCTACCCATCATGGGAGGTCCTTCTGGACAAGGTCACCTCTTTATCACCGCCCCTGACGGAACGCCACAACTGGTCGTCGACAGCGCTCATTTAAACCAACAACAATCCAATGTCGAAACCACAACGTCGGAAAAACCAGCTACGCAACAGGACGGCGTATTTCAAGTGCAGCTCTCTCCAGCCATACTTCAACAACTCAGTCAAACATCGTTGGATATTCAATCTCCTCGGCCCAATGTTGTACACAGCATTCTGACACAACCTTTGCATATCGCCGGGCAAGTACCAGGTCAGCTACCGCAAATTCAAATGGCGCTGGCTCAAGTTCTTCCCAATCAATCCGAGGCTCAGAACCAGCCTCCGACGAACGCGCAGAGCACGCCGCCTCAAGTTCTGATCCAAGCCGTACCATTGTCCACGCCCCAACGGCAAGAATTGCAGGCACAAACCACACAACAAGGAGCCGAACCAATCGCAACGTCACATCAACAACTGTTACAGCAGTTACTACAAGGTCAAGGGAGCCCGCAGGTCAATGTACCAGAGGCCACACAAACGTCTGTTACGTCGACTCAAGCAAACAGTCAACCGACACAACTTAGTTCCCAGCTCCCCGCAACAGCAGCTCTACAAAATTTACTCACTCAAAACTTACAAGGTGTAAGTAACCCCCAGTCCCCCGCTCAGGCGCCTCAGCAACAAAAGGTATTCGTGGATCTTCAGAAGATCGTTCAGACCCAGGAACGCGAGTTGCGCGCGCGCCGGGAACTGGAGGAGAGACTCGAACAGGCCCATCGAGATAGTCGCAAATTTCAAACGGAACTACATCAGGCTCAGAAAGAGGCAGAGTCTTATAAGGACCGTCTCCAGGCTATTAAGGAAAAAGATAGCGACGATGAGCCCGCTGTTGGTAATGTCAGTGGTGTACCGTCTGGCGGACAGTTTGCGCGGCAACTGTTTATGCAATCTGAAGGTCTTGAGGAATTGAGCACGATGACCGCTGACGCCGTAGACATGCTCAGTCAGGTGGCTCAAGAGAGCACCGCGGTGACACAGGTGGAAGTTGATGAAACCGTGGTGGACGAAGGGGATATTACATGTACATAG

Transcript

Protein

Uniprot

Uniprot term	Description
P81069	GA-binding protein subunit beta-2 OS=Mus musculus OX=10090 GN=Gabpb2 PE=1 SV=2
Q0V8G2	GA-binding protein subunit beta-2 OS=Bos taurus OX=9913 GN=GABPB2 PE=2 SV=2
Q8TAK5	GA-binding protein subunit beta-2 OS=Homo sapiens OX=9606 GN=GABPB2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR050663	Family	Ankyrin Repeat and SOCS Box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09454	GABPB; GA-binding protein transcription factor, beta	-	Mitochondrial biogenesis	ko03029	deepkoala