Gene detail

Detailed information of XP_028400362.1 in Dendronephthya gigantea

Genomic Location: NW_021163038.1:1071738...1076516
NR annotation: XP_028400362.1, uncharacterized protein LOC114523588 isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028400362.1

ATGGACAATAAGAACAAATTTCAAGGGTTAAAAAATCTTCATCAAAACTTGCACTCAAATGGAGGATTCTCAAACATAACTTTTATAAACAATTCATCCTGTATGGATGTGAAACAAATTCCCATAGGAAATGATTTAGCTGCTGTTGGCAGTTTGGAGGAACAATTTGATACAAATTTAATAAAATGCACTTCTCAACGGGAAGCAAGTAAAGATAATATTGTACCAGGGTCAAACTCCTTGCTGAAAGCTGTCAAAAATGTTTATGTTAAGAATGATGTGTATCTGACAGAGCCGAAGATTTTTGTTGGGAATATAAGTTACAAGCTGTCGACCCTTCAGTTGAAGGAATTCTTCTCAAGTTTTGGAAGGGTTATTTTTGCTCAAATTGTTAAAGATAAGGTGAAGAAGAGGTCAAAAGGGTATGGCTTCGTGACATTCAGTCGCACGAGTGAAGTTGAGAGAGTATTACAAGCATCAGATGATGAACTTATATTGGATGGGCGAACACTCAGAGTTAACAGAGCTGAGAAAAAGAGAAGATCAAGGGCAATTCAAGAAAATACAGAAGAAAAAAATCCGGAAAAATCAATAGAGAATTTTGTTCAAAAATACATGGAAAGCAGTGAAATCTCAGAATGTGAGATGGATGATGGTGATAATGAAGAGACTGATGTTAAGATTTATCGTCTTAATGATGATATATTGCTCTATATTTTTATGTTTTTAACTATCAAAGAACGTGTCAAAATTGAAAGAGTTTGTCAAAGATGGCGTCAACTTGCAAGACAGACCTGGTTGGTTCTAACGCACTTAGACTTCAAAGACGTGTTTGTGCCTTTCCAGGGAACAGGAGGACTAACAGACCGTATCTTGCTCTCGCTCTTCAAAAGAGGTTGCCAAAATCTAAGATCTCTCGACTTGTCTCATTCCTCAAGACTCCTTTCCGACTATGCCCTTTATATGATTGGTCAAAACTGCCCGGAGTTACAAGAGGTCAATTTATCTGGTGTTAATGCAACAATGAAGTCGTTGAAAGAAATGAGCGGCAATTGTAGGAAGCTAAAGAAAATAACATTGCAAAGATGTTACGAAGTTGGGGAAAAAGCGCTTTGGTGGCTGTTCAAACAATGCTCGGATCTCGAATATATTGACGTCGAGGGAAATATCAGAATTACTGGACAGTGCTTCTTCATGCTGACGGAAAAATGCAGAACAGTTATCGCGGATGATTGCATGAAGTTAACAGACGATGGTTTGGGACATCTTGCAAAAAGATGTGGCTATTTACAAGAACTCAGCATTTCAAATTGCATGTGTTTGACAGATAGCGGGATTTCTGATCTCTTTATGCGTTGCACGAAACTGAAGCGACTTTCCTTTTGTAACTCTTCGAAGCAAATCACGACCAACAGCTTACTAGCGCTACGACACTTGACTGAACTGGAGGAGCTCGAGTTAGCGAAGCAAGATCCGGTGAATGATTCAGTGATGTTTGTCATTGGTTCAAACTGCGTTCATCTCAGGGTGTTGGATCTAGAAGCTTGTCATCAGGTAACGGACAAAGGTATTCAGTGTCTCGCCTCGTGTTTTCAGCTTGAGAAATTGGTCATAAGCTATATGGACGAGGTAACAGATGCTAGCGTGATATCAATAGCTCAGAATGGAACGTTACGAGAATTTCACGCGCGATCTTGTGTGAACCTTTCTGACAGAGCTGTTATGCAAGTTGCCTTGCACAATCCCTGTCTTCAAGTACTGGACCTCAGTGGATCGGACAGGATAAGGAATGGGTCGTTGACTATTTTAGAGGAGATTCTTGGGGACAAAGAGGGTTTCATTTTGAGCGTCGGAGGCACTGCTGTAACAATGGACCAGGTGTTAGCGACGAAGGAAAGTTGTCCCAGCTGGGATATTACAACACAAGACTTATCAGATTATCATTTACGAACAGATTTTGATCCATACATGGACATGGGTCGTATAATGCCAGAGTACAGCGACTCAGATGAGGAAGGTCCCTTCCAGTTCAACGGAAACGCTGGATATGATGATGATGATGCAGATTATTATCTATCAGCAGATGATCCTTCTGCCTGGGAGTACCAGGAACAATGGATGTCGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q08937	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
P49314	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1
Q9ZUU4	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan