Gene detail

Detailed information of XP_028401394.1 in Dendronephthya gigantea

Genomic Location: NW_021163041.1:1425029...1434658
NR annotation: XP_028401394.1, fibropellin-1-like isoform X3 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028401394.1

ATGCTGAGTCTCACTGCTGCTATATTTCTTGTGATATATATTACTGTTGTGGCTGGAAACGCCTCAACTGAAGTTATTCTCACATGTAAAGAAACAGGGACCAAAATAGTTAAAAAAGGTTGTTTCAAAGACCCATCAAGAGAAGACAGAACACTACCGGAATTATTGGCCAATTTTAGAGATAAAATAGATTGGAACGAATGGAAAAATTTTTTAGATACATTTTCATGCGAATGCGCTAAACAAGCGAGAAAAAAGGATTACCGCTACTTTGGTTTGCAGTTTTATGGAGAATGCTGGTCAGGAATGCACTCTGAACGCTTATTTTCTATCAAGAAACCTAGTCAATGTCTTGGGTATGAATACAAGACGTGCGAAGATTCCACAAACAGCGCGTGCACTGGTGGAGGAGGATATAATTACGTCTATGAAATTGTGTATGAAGAAACTGAAACAAACCTTTGCGAGGAGCTCTCTCCTTGTGTGAATGGTGAGTGCGTTTCAACTGGGGATTCGTACATGTGTGATTGCTTATCTGGGTATGAAGGAGTGAATTGTGATACTCTTATTGATAATGATGATTGTGCTAACAGTCCATGCGTAAACGGGGAATGTATTGACGGGAAAAATTCATATGAATGTAAATGTTCGCCTGGTTATAATGGACAGAATTGCGAGAAAAACATCGATGATTGTGCTAACAGTCCATGCGTAAACGGAGATTGTATTGACAAAGTGAATTCATATGAATGTAGATGTACACCAGGTTATAATGGGCAGAACTGCGAGAAAAACATCGATGATTGTGCTAACAGTCCATGCGTAAACGGAGATTGTATTGACAAAGTAAATTCATATGAATGTAGATGTACACCAGGTTATAATGGGCAGAACTGCGAGAATAACATCGATGATTGTGCTAACAGTCCATGCGTAAACGGAGATTGTATTGACAAAGTGAATTCATATGAATGTAGATGTACACTTGGTTATAATGGGCAGAACTGCGAGAATAACATCGATGATTGTGCTAACAGTCCATGCGTAAACGGAGATTGTATTGACAAAGTGAATTCATATGAATGTAGATGTACACTTGGTTATAATGGGCAGAACTGCGAGAATAACATCGATGATTGTGCTAACAGTCCATGCGTAAACGGAGATTGTATTGACAAAGTGAATGCATATGAATGTAAATGTACACTTGGTTATCATGGGCAGAATTGCGAGAAAAATATTGATGACTGTGCTAAAAAACCATGTCGCAATGGTGGAAGATGTGTTGATAAAGTGAATTCATATCAATGCGTTTGTAAAAGTGGATATAATGGAGCGAACTGTGAAACAAATATCAATGACTGCGCAAAAACACCTTGTCGTAATGGTGGAAGATGTGTTGATAAAGTGAATTCATATCAATGTATTTGCAAACCTGGATATGATGGAGTGAACTGTGAAACAAATATTGATGACTGTGCTAAAAAACCATGTCGCAATGGTGGAAGATGTGTTGATAAAGTGAATTCATATCAATGTGTTTGTAAAACTGGATTTAATGGAGTGAACTGTGAAACAAATATTGATGACTGTGCTAAAAAACCATGTCGCAATGGTGGAAGATGTGTTGATAAAGTGAATTCATATCAATGTATTTGTAAAACTGGATTTAATGGAGTAACCTGTGAAACAAATATCGATGATTGTGCTAAGAATCCATGTCGTAATGGTGCCAAATGTGTTGATAAAGTGAATTCATATCAATGTATTTGTAAAACTGGATATAGTGGGGTGAACTGCGATAGTGTGACCATTAAACCGAATTATTGTAAGAACGCAAATTGGTGGCACAGTTTTGATAAAAAAGGATGGTCAACTTGCAATAATAACAAGCTCTTTATCACTGGATTTTATCGAAACAAATTGGATAATTGGGACAAAGATCAAATTTATCGACTCGAGGAGGCACGATGTTGTTCATCCAACTCACTTTATCTAACACAAAGCAGCGAGTGTACGGATGCAAATTGGTGGGCCTCTCTTGACAAACGAAGCACTTGGAGTCTCTGCCCAGAAGGATACTTCCTCAATGGTCTTTACCGGACATCAGGAAATAACTTACACAACATCGAAGAAGGAAGATGTTGTAAGCCTGTTAATCATCCCAAGAACTACGAGAATTGCTATAACGAATATATTCGACACAAATTTGATAAACAAGGATGGACAAAATGTATGAAGACTGGTTATTATGTCGTGGGAGTGTATCGTGATCATAACAAAGACTGGCTCCACGATATCGATTACTTGAAGTGTTGTAAAATGTGGACAAGACTTTAA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005112	Molecular Function	Notch binding	Interproscan