Gene detail

Detailed information of XP_028402233.1 in Dendronephthya gigantea

Genomic Location: NW_021163011.1:4533074...4538349
NR annotation: XP_028402233.1, nucleolar protein 8-like [Dendronephthya gigantea]
Species abbreviation DGIGA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_028402233.1

ATGTTTATCGGCGGTTTGTACAAAGAAGTATCGAAAGATGACTTGAGGCTAAAGTTTAAGCCTTTTGGTGATGTCAAAGACTTAGAAATTATAACCCGTCATGACGATTCAGGAGATCATATTAAAACGTTTGCATACATTAACATTGACATCTCTGAGAAGAATTTTAGAAAATGCTTAGCAACTTATAACAAGTGTAACTGGAAGGGCCAAATTCTCAAGGTAGAAGTTGCAAAGGAAGATTATTTGACAAGATTGCACAAAGAGAATCAGGTAAATGATGAACAAAGTGAAGCTAATTGTAATATCCCAAAGATTTCCGTAATAGAAGATATAAAATCAGCAGTTCCAGGGACACCTGTACCGAAAAAACGAAACTGGGTTGTTGGAAAATTTGGTAGAGTATTACCAATTGTATTTTTGCGCCGACGAGATGGCAAGAAGATAGCAAAATTTGATCCGTCAAAAACTGTGCATTGTCTAAAGAAGTTGAGGGGTAATGACTTTAACCACCGCCATTCTGTTGATAGCTTAACTTGGAACCTTTATCAAAGTGATTCAGATTTTAATGGAGTTGATGAAGCCAATCCTACCAATAGAGTTTCAATCAAACGTTCGCTTGACGACAATGGCGATGACAATAATAACAAGAACAGCCAAAAAATTAAAGCGAAAAACGAAGAGTCCTGCTTCAAAAAGATTAAGATCCGTGAGACTCTACTGTCTGATGAAACAGGCTATTGTCAGGGTAGTTTTAAACAGCATCAAAAAGAATCTGATCTAATACAAAACAATGAATCGGGGTTTTCCACAAAGAAAAATTCTATTGTTGACGATAAACCAACTTCATTGCCCTCCATGAACCAAAGTTCTGACAGTAATACAAGTCAGTCGACAAGTCATAACAGTTGTTCCATAGAAGATAGTTCGAGCTTAGATGAGAGTATAACTTCTGTTTATAGCAGTGATGATAATTTGTTAGCACCAAGTTTCAAAAATGAACGGCATCAAGAAAATGATAAACCAAGCTCAAAGAAGAGAAAAGAGGAGAATAAAACGGTTGAGAAGTACTCTGATGACAAAGCTGATCATCTTTTGTCAAGTAACGAAAGCAAAGTCCAGTCAGAAACTGAAGAGTCAAGTCAGGCGTCAAAAAGAAAGTATTCCTTTTCGGAAATTTCGCCAAAGCATGAATCACTAAATGAGCATAACAGAACCAATGAACGCAGTTCTTCAAATGAAAAATCATTCATGGCTGCAGAATCCCATTTCAAATCAAGAGTGAAAAAAGAAATCTCCAACAAGTTAAGACTGGAAACTTTAGAAGAAAGAAAAGAAGTTCTTAAAAATCAAAAAGAAATTGTAAAAAAAGCCCTGGAAAAGGTGGATTCAAGTTCTGATAAAGGAGGAAATCATATTGTTTTTGAGAATGATAACAACATGGACGGAGAAACCTTGAAAATTTCAAGTGGAAGAGAGAAAGTAACCGGCTCAAAAGCACTTGCGTGGCTAGGGATGGCTTCTTCCAGCGATGATGATGACAATGAAGAAGTTGACGAATTTCTTGGTAAAGAATATTTTGATGGAAAATCCGGCGAAAAGCTGATGAAATTGCAACAAACGTTTGGTCATGATCAAAGGTTCAAAATGGATGAACGTTTTTTAGAAAGTGACGATGAAATAGAGTCGACATTAGAAACACCAATTCTTGAGGAGGACGATTTAGCCCAACAACTAAAAGATGAGAAACGTTTGTCTTTGAAAGTTCTTCAAGATGTTCTTGGTACAAACTCGGTGTTTTTGGAAGAAAGCGAAGATTCCAGGAACTTGTACAGAGATTCTGTTGACACACACTATGATCCCAATCGCGAAGATCATGCCAAATTTGAGGAAGATATCACAAAATCTGACAGTCCTGAGAAAAAATTAGAGAGCAATGTGGTAAATGACGAACCAAAATTAAACGAAGATGCTTCCACGAAAGAAAGATTTTACACCGTATCTGATTCATTGAAAGATTTCTTTGGCAATAAAGAAAAGGAAAATAAAACGTTTTCATTTTTTTCGGATTTGGATGAAATTGAAGACAATGCAGAAAACTTAAATTCGGCAGAACAAGCGACAGTTGTCAGTAATTGGAAACCTCCAGTGCAGCTGTCGCAAGCACTTCCGTACGACAGTAGTGCCAGTGAATCGGAGGATGACGTTGAACAGGCTGATAGTAATCACTCGTCAAAGGTCAGCACAAAAAGATGTTTATTTTATCATCCAGATAATCTGGAAATGATGAACGCACTGGAAGTTGAAAGTTCTAGTTTTATGAGACATGAATCAGTTGAAAGTTTGAACCGCTATTGGGTCGAGGTAAGACAGAAGATGACACAGGACTATAAAAAGAGACGAAAGGATGCTTTACGACGCCAGAAGAGAACATCATATAAACGAGTGGATCATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76FK4	Nucleolar protein 8 OS=Homo sapiens OX=9606 GN=NOL8 PE=1 SV=1
Q3UHX0	Nucleolar protein 8 OS=Mus musculus OX=10090 GN=Nol8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005730 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034138 all species →	Domain	Nucleolar protein 8, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48029 all species →	NUCLEOLAR PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14836	NOP8, NOL8, NOP132; nucleolar protein 8	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.