Gene detail

Detailed information of XP_028403073.1 in Dendronephthya gigantea

Genomic Location: NW_021163045.1:1079793...1088748
NR annotation: XP_028403073.1, echinoderm microtubule-associated protein-like 2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028403073.1

ATGGAGTCAATGGACGAGCAAGCCAATGTAAATAACTCCGCAGAATGTTCTGGAGATTATCGTGACTCTGACGAGCTTGCAAGTCTTAAGAAGCAGGTCAGAGATCAAGGAGACGAAATCCTTGTTCTTAAATCATCTTTGGCTGATGCTTTGAGAAGACTGCAAGTATTGGAGGAACGGAAGCCAGCGAGTGCTTCTGGAAAACCTAAAAGGCCCAATTCAACATCAGCTCTTGGAGACCATACCCCATTCAAGTATGCTAGTCAAAGTAAGAAGTCTGGGAAATCACCAACAAATAGCTTTGCATCAACACCAAGACCTCCATCATCGAAGCACAGCGCTTCTGATTCTGCAAGCAGGAAGGGGTCATCTATCAGGAGAAAAACTAGCAATAGTGGCTTATCAAAAGAAGAACAAGCTGAACGAGATGCAGTTGCTATGAAATTCCAGCTGCGTGGTAGGACATTGAATTTTTATCCGCCAAGTAATTTTGATGAATCGTCTCATTCTGGAGATGCTCCTGATGTGAAGTTACTATTGGAATGGGTGCATGGTTACCGTGGAAAAGACTGTCGCAACAATCTCTATTGCTTGCCATCCAGTGAGATTGTGTATAACACAGCTGCTGTTGTAGTAATATACAACCCAACAACCAAGACCCAGCGACACTATACTGAACACACTGATGATGTCAAATGCCTCGCTCTGCATCCAAACAAAGAGATTATTGCAAGTGGTCAAGTTGCAGGACATGCAAAGAAGGAAGGCAAGCCGCATATTCGGATCTGGAACATCACCTCCCTGCAAACACTCAAAGTAGTTGGTTTGGGATCATTTCAAAGGGGATTATCTTGTGTGGCATTTTCAGTTGAAGATGGTGGTGCTCATGTGGTTGGTGTGGATGATGGAAATGATCACAATTTATCCATCTGGGAATGGGAAAACAAGAAAAAAGTAACTGAAGCTAAAGGAGGTAATGAGCCAGTCTTGGCTGTGGATTTCTACCCGGGTGATTCAAAGCGTCTGGTCACGTGTGGCAAGTCCCACATCGCATTCTGGAAACTGAACGATGAAAAAAAACTCGAAAAGAAAATGGGCGTTTTTGAGAAACACGCTAAACCAAAGTATGTGTTGTGTTTTGCATTTGGACAAAATGGGCAGGTGATTTCTGGTGATTCAAATGGCAATATCTTCATTTGGGCAAACGAGGGCAACCAAATCACACAAGAAATAACAGCTGCTCACGAGGGGCCAATCTTCTCTATCGAATCATTTGAGGATGGAGCGTTTCTCTCCGGTGGAGGCAAGGATAGGAAAGTCTTCCTGTGGGACAGCAATTACAACAAGTCTGAGAAACAGTTAGAGATTCCAGAGGAAAGTGGTACAGTAAGATCTGCTATCTTGGGTCCCAATGATGACGAAGAACGATCCGTCGTGGTTGGAACAACGAAAAACTGCATCCTTCAAGGAAAATTTATAGAAGAAAGCAATCAATTTCAGTGCTTGACAAAGGGTCATTCTGAGGAAACGTGGGGTCTGTGCGTCCATCCTTCTAAGCCAATATTTGTGACATGTGGTTATGATAAGATGTTGTATGTTTGGAACAGCGAGGATAAGTCTTTGGTCTGGTCTCAGCCGCTGGAGGGTGCTCTTCAGTCAGTATGTTTTCATCCCAATGGTAATTTCCTGGCAGTCGCATCTCAGAACAATAAGTTCCACATTCTTGACGCTGATACTGGAGAGGAATTCTACACCTGTGAGATTGGTTCAGAACAACATGACTGCATAAAGTATTCTCCTGATGGATGTTATCTAGCGGTTGGCTCTCACGACAACTTTATCTATTTGTTTACTGTGAGCGAGGATGGCAAGCAGTATAAAAAACATGGACGACTGTCCGGTCATTCTAGTTACATAACGCATCTTGACTGGTCCAAGGACAGCCAACATTTGCAAAGCAATTCTGGAGACTACGAGATCTTATACTGGCAGGCAAAAGATTGCAAACAAGTTTCATCAGGATTTTCAATGAGAGATACCGAGTGGGATTCTTGGTCTTGTGTGCTGGGGTTCCCTGTGCGAGGAATGTGGCCAGAGGGCGCTGATGGAACTGATATCAATACGTGCATTAGATCACATAGTTCTCAGTACCTCGTCAGCGGTGATGATTCAGGCTGTTTGAATATGTTTACGTATCCTTGCTCGAAGCCAAAGTCCACGCCAAATGTTGCCCACGGTCATAGTTCCCATGTTACCGCCGTACGTTTCCTAGCAACGGATTCTTATGTCGTCAGCACCGGAGGCAAGGATAATACCGTCATGCAATGGAGGCTCGAAAGATAA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q4V8C3	Echinoderm microtubule-associated protein-like 1 OS=Rattus norvegicus OX=10116 GN=Eml1 PE=1 SV=2
Q05BC3	Echinoderm microtubule-associated protein-like 1 OS=Mus musculus OX=10090 GN=Eml1 PE=1 SV=1
O00423	Echinoderm microtubule-associated protein-like 1 OS=Homo sapiens OX=9606 GN=EML1 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03451	HELP	HELP motif	Repeat	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR005108	Conserved_site	HELP motif	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR049813	Domain	Echinoderm microtubule-associated protein-like elp-1, trimerization domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0072686	Cellular Component	mitotic spindle	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala