Gene detail

Detailed information of XP_028403343.1 in Dendronephthya gigantea

Genomic Location: NW_021163046.1:1352618...1377424
NR annotation: XP_028403343.1, pentatricopeptide repeat domain-containing protein 3, mitochondrial-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A1Z9A8	Small ribosomal subunit protein mS39 OS=Drosophila melanogaster OX=7227 GN=Ptcd3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17177	PPR_long	Pentacotripeptide-repeat region of PRORP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037387	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan
IPR033443	Domain	Pentacotripeptide-repeat region of PRORP	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17659	PTCD3; pentatricopeptide repeat domain-containing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala