Detailed information of XP_028404488.1 in Dendronephthya gigantea

Genomic Location: NW_021163053.1:305363...315326
NR annotation: XP_028404488.1, polypyrimidine tract-binding protein 1-like isoform X1 [Dendronephthya gigantea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P17225Polypyrimidine tract-binding protein 1 OS=Mus musculus OX=10090 GN=Ptbp1 PE=1 SV=3
P26599Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=2
Q00438Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ptbp1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13893RRM_5RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)DomainInterproscan
PF11835RRM_8RRM-like domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR021790DomainPTBP1-like, RNA recognition motif 2Interproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR006536FamilyHnRNP-L/PTBInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15592MATRIN 3/NUCLEAR PROTEIN 220-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0043484Biological Processregulation of RNA splicingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13218PTBP1, PTB; polypyrimidine tract-binding protein 1-Spliceosomeko03041deepkoala

TOP