Gene detail

Detailed information of XP_028404739.1 in Dendronephthya gigantea

Genomic Location: NW_021163053.1:1324490...1328775
NR annotation: XP_028404739.1, lysosomal alpha-glucosidase-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028404739.1

ATGAAAGTCCTTATATTGGAATTCCGGATTTTAGTTGTTATCTTCTTCGCTTTTGTGTATTGTCACAGCTCACCAGACTGTACACGCGATGAAGATTCGAAGCGGTTTGATTGCTATCCTGACATTGGAGCCTCCGAAGACAAATGTCAGGATCGTGGATGCTGTTGGAAAGACGCAAGCAATGCGTTATACGGAGGAAAGGTTCCTCTCAACGTACCATATTGTTTTTACCCAAAAAACTTTGGTTATGAGCTTGTGAATCAACAAGAAACCGACACAGGATTTCTACTTGACCTTCAAATGCAACAGCACGGACCATATGGTGGAGATGTTGTGAATCTTAAAGTTGATGTTCGCTTAGAAACGGAATATCGTGTTCATGTTAAGATCTATGATCCCAACAATCAGCGTTACGAAGTTCCCGTGGAAACACCAAAGATCACAAAGAAAAGTTCTGAACAGGACTATCTCATCAGTTTTACTCATTATCCATTTGGTTTTGCAGTCACCAGAAAGTCGACCGGTCGCGTGCTCTTCAACTCTACAGCTGGAGCGATGATTTTTGAAGATCAGTTTTTACAACTGTCTACTTTCCTTCCATCAACTAATATTTATGGTCTTGGTGAACATGTTGACAGTTTTAAGCTAAACACAACGTGGCAAAAACTGGTTATGTTTGCTCGTGATGGTGGAACACCATACGGTGGAATCAACTTGTATGGTGTTCATCCATTTTATGTTAATATTGAACCCGATGGAAACGCCCACGGAGTATTCTTACTTAACAGCAATGCTATGGAAATCGTCTTGCAGCCAACACCAGCACTGACATACCGTACTATCGGTGGAATTTTAGACTTCTATATATTTCTAGGTCCAGAACCGGATTCTGTCGTCCAACAATACACCGAAGTGATCGGACGTCCATTCCTGCCTCCATATTGGTCTCTTGGATTCCATCTCTGCCGTTGGGGATATGAAACCTCAAATCAAACTCAAGCAATTGTGAACAAAATGCGGCAGTATGGCATCCCCCAAGATGTGCAGTGGAACGACATTGATTATATGAATAATCATTTTGATTTCACGATAGATCCTAAAAGATTTGCTGGCCTTCCAGACCTTGTCAATGATCTCCATGAACACAATCAGCACTATATCCCTATTACAGACCCAGGGATTCCAAATTCTGATCCTAATTATGCCCCTTATAGTGATGGTCTTAAAGTCGGAGCATTTGTTTTGAAGCCGAACAGCGATGATCCCTTGGTGGGAAAGGTCTGGCCTGGAAATACGGTCTTCCCTGACTTTTTCAACACGAAAACAATCCAGTATTGGCAAGATCAGTTACAGAGTTTTCACGATAAGGTGAAGATTGATGGTCTATGGATAGACATGAACGAACCTTCTAATTTCGTGGACGGTTCCATCTCAAATCCATCCTGTCCTAAATCGTCATACGAAGCACCACCATACGTTCCGGGTATTATGGGAGGTCATTTGACGGCTAAAACAATATGCATGGGAGCAAAACACGCAATTGGCATACATTACAATTTGCACAGTCTATATGGACATTCTGAATTGGAAGCCACTGCGAAAGGTCTTCAGAATATTTTGAAGAAACGGACTTTGGTAATCTCGCGTTCAACATTTCCGAGTAGCGGAAAATACGGAGGACATTGGTTAGGAGATAACAACAGTCAATGGCCCGACATGAGCTACTCTATACCAGGTATACTAGATTTTAATCTCTTTGGTATTCCTATGGTTGGCGCTGATATTTGTGGTTTTAATGGAAACACCCAGAAAGAATTGTGTACGCGATGGTTACAGCTTGGAGCGTTCTATCCGTTTTCACGAAATCACAACACAAAAGGTGCAACTGCTCAGGATCCTGCCTCGTTAGGTCCAGATGTAGCAGCAATTGCTCGCAAAACGTTCTTAATTCGTTACAGTCTTCTACCCTATCTTTATACCTTATTCTACAAAGCCCATGTCCAAGGAAGCACTGTCGCCCGCTCACTGGTGTTTGAATACCCGAAAGACCCAAATACTTATCTCATTCAGTCTCAGTTCCTCTGGGGACCTGCGCTATTAATCTCACCTGTCCTCACACAGTCCTCCGTTCAAGTCGATGCCTACTTCCCCGATGACGTGTGGTATGATTTTTATACTGGAAAAGCTTTAACGGTTCGAGGGCAACACGTTACACTGGACGCGCCTATTGATAAAATTAATTTGCATATTAGAGGAGGCTATGTTATCCCAATGCAGGATCCATCAACAACAACCGCAGCAAGTCGTAAGAATCCCTACTCTCTTAAAGTTGCTTTAAGTTCTTCTGGTGATGCAGTTGGTGATCTTTACCTTGATGATGGTGAAAGCCTAGATACTAAGGAGACTTTACTGGTTAAATTTACAGTCCAGTCGAGAACTCTCACCTCTTCACCAACACTGGCGGGATATTCTCCTTTGGCTAAAGTCGGCAATGTTACCATTCTTGGAGTGATGCCGAAACCAAGTCAAGTATCAGTCAATGGAAAACAAACGCCATTTAACTACGATTCATCTTCAAAAATTCTAGGCCTTGGGGCATTAAATTTGAGCCTTGTTGACAAATTTGTCATAACCTGGCAATAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q6P7A9	Lysosomal alpha-glucosidase OS=Rattus norvegicus OX=10116 GN=Gaa PE=2 SV=1
P70699	Lysosomal alpha-glucosidase OS=Mus musculus OX=10090 GN=Gaa PE=1 SV=2
Q9MYM4	Lysosomal alpha-glucosidase OS=Bos taurus OX=9913 GN=GAA PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13802	Gal_mutarotas_2	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain	Domain	Interproscan
PF01055	Glyco_hydro_31_2nd	Glycosyl hydrolases family 31 TIM-barrel domain	Domain	Interproscan
PF21365	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan
PF00088	Trefoil	Trefoil (P-type) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017957	Conserved_site	P-type trefoil, conserved site	Interproscan
IPR011013	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR044913	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR030459	Conserved_site	Glycosyl hydrolases family 31, conserved site	Interproscan
IPR000519	Domain	P-type trefoil domain	Interproscan
IPR030458	Active_site	Glycosyl hydrolases family 31, active site	Interproscan
IPR025887	Domain	Glycoside hydrolase family 31, N-terminal domain	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR000322	Domain	Glycoside hydrolase family 31, TIM barrel domain	Interproscan
IPR013780	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR048395	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22762	ALPHA-GLUCOSIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004558	Molecular Function	alpha-1,4-glucosidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12316	GAA; lysosomal alpha-glucosidase	EC:3.2.1.20	Exosome	ko04147	deepkoala