Gene detail

Detailed information of XP_028405601.1 in Dendronephthya gigantea

Genomic Location: NW_021163058.1:1399321...1413825
NR annotation: XP_028405600.1, structural maintenance of chromosomes protein 1A-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028405601.1

ATGGGTGATTCTGACAGTGAAAATATCCATAGCATGGGATTTTTGGACAGACTAGAAATAGAGAATTTCAAGTCTTACAAAGGAAAACATGTAATAGGGCCATTTAAAAAGTTTACTGCTATCATTGGACCAAATGGTTGTGGAAAATCTAATTTAATGGATGCTATAAGTTTTGTGTTTGGTGAGAAAACATCCAGTCTTCGTGTTAGGACTGTTAAGGATCTAATTCATGGTGCACCAATCAATAAACCAGTTTCAAGCACTGCATCAGTAAAAGCTGTTTATTGTGAAAATGATGGATCTGAAATTTCCTTTACTCGAAGAATTATTGGTAGTGGGACAGAATATCGAATTGACAAGAATGTGGTGCCTCCTGCTGAGTACAACAAAAAGCTTAAATCCATTGGAATCTTTGTAAAAGCTAAAAATTTTTTAGTTTTTCAGGGAGCTGTGGAATCCATTGCTATGAAGAACCCAAAAGAACGAACACAGATGTTTGAAAAGATCAGCGGATCAGGAGAACTTGTCTCTCAATATGAGACCAAGAAACAAGAGATGCAGCAAGCAGAAGAAGATACGACTTTCAATTATCAAAAAAAGAAGGGAATCATGGCTGAAAGAAAAGAAGCCAAGGCAGAAAAAGATGAGGCTGAAAAATATCAGAAGTTGGTCAAAGAATATAATGACAATAAACTAGAGGCTCATCTGTTCAAACTGTATCACAATAAGAAGGATATTGAAGCTTTAAATACAAGTTTAGATAACAGTAACAACGCCCTGTCAACCTTGTTAGAAAAACGCAGGCGAGTTGAAAATGAGTTGAAAGGCAAAAAGAAAGAGCAAGGGGAGATATCAAGAAAACATGCTGTGTTAGACAGAAAGATCAAAGATAAGGAAAATGAACTTGGAGAATTAAGACCGATTTATATTAAAGCAAAGGAAAATACAACACACGTTACCCAGAGACTTGAAACAAAACGGAAAGCACTGGCAAAAGCTCAGAACGTTCACAAGAGACACAAAGATGAGATCAAGCATCTACAGAATGAGCTGCAAGAAGTCAGCGATCGTGCTCAGCAATATGAAGAAGAAATTGCTGAGGAAAGTCAGAAAGAGGATATGGAGCTAATGTCTTCTCAACTTGAAGAGTACAATAGTTTGCGTGAAAGAGTTGGAATACAATCTTCTATTCTTCGTGAAGACTTGAATAAGATCAATCGTGATCAAAAATCAGAGGAAGAAGATCTTGAACAAGCAAGACAACAACAGGCTGATTTAACAGCGGAGGAAAATAGATTAAATGATGAAATCCACCAACTGGTCGAACGAAAGCAAAAGCTTCTGGATTATATCAGAACAAATGAAGAAAGACTGAGAAAAGATGAAGGTGAAGCGGAAACACTTGAGCAGCTTATCAGCGGTGCTGAGCAGAGGTATCAAGAACTTAATGACAAAGCAAACGAATATCAATCGAAAATTAACGAGTCCAAGGTTGACAAGAACGAGAATATAAGATACCAAAAAAAACAAGAATTGTTGGACAGTCTGAAACGATTGTTTCCTGGTGTTTATGGTTGCCTTATTGATCTTTGCGAACCCGTTCACAAGAGGTATAATATTGCTATCACCAAAGTACTTGGTAAAAACATGGATGCTGTTGTTGTTGATACTGAGAAGACTGGTAAAGAATGCATTCAGTACATTAAATCCAAGAATGGTGATCCAATTACATTTCTTCCTTTGGACACTATTCAAGTGAAAGCATTGGATGAAAAATTGCGTCAAATAGGCGGAACTGCAAAGCTTGTTATGGATGTTATCCGCTGTGAACAACCTCCAGTGAAGCGGGCACTCCTTTTTGCATGTGGTAATGCTCTTGTGTGTGACAGTGTTGGGGAAGCTAGAAAGTTTGCGTTTAGTGGTCAGGAGAGAAGAAAAACCATTTCTCTTGATGGCACCATGTTCCAGAAATCCGGAGTCATTTCAGGAGGAGCGAGTGATTTACGTTCTAAAGCCAAGAGATGGGATGAGAAGAATGTCGAAGCGATGAAAAAGAAACGGAACGATTGTTTATCTCAGTTGAAAGAAGTTGCAGCTGACAGACGAAAGAGACCAACTTTGGATAATATCAAGTCCCAAGTTGTAGGTTTACGAACAAGATTGCAATATACTCAACGTGAAGTGGAGTCAAATGAAAAACGACAACGTGATGCGACAATGCAAGTTGATCTTGGAAGACAAAACGTGCAATCTCTCAAGCCCAAAATAGAGAAATATGAGCAATCGCTCAGCGACAGAAAGAAGTCGATTGAGAAAGTTCAGGAGAGAATAAAAAATATGGAAGATGAGATTTTCCAAGATTTTTGTCAGTCAATTGGCGTTGATAATATAAGACAATATGAGGAGAAGCAACTGAAGACCCAAAAAGAAAGGTCAGAGCGACGATTGCAGTTTTCAAATCAAAAATCCAAGTTAAGAAGTCAGCTTCAGTACGAGCAGGGTCGTGACACTAAAGCACCCGTGAAAAAACTTCTAAAGGATATCGAAGCTGATGAGAACAACATTGTAAAACTAAAACAAAATGAAAAGAACGAACTGGAGGCTATAAACAAAGAAACAGATGCTGTTAATAAGTTACGCCTGGAACAGCAAGCAATGAAGTCACAACTGGATGAAAAGGAACTTCAAGTGAAAGATGTGAGAAAAACATTGAATAATCAAGCAAAAGACGTAGGAAACAAACAGAAAGAAATTACATCAATTGAAGCAGAATTGGAACAGAAGAGAAGTGAACGACATGGCACCCTAAAGACCTGCAAGCTCGATAATATTCCGCTACCCTTTCGCCGAGGAAGCATGGAAGACATAGAACTGTCTGGTTCAGGATCAAGTCAAACCGATACAACAGACCAAACAGACTCTATGGATACTGAGCAAGATGTCAGTGAGGGAACCCGTGCATTACTTCGAGAATTAGATAATATTCAGTTAGACTACCATAGTTTGAGAAGAGATCTTAAAAATATCAAGGGTGCATCAGACGTTCGAAATATGGAGAAAGACATTTTTGATAAACTAAGCAAGTTAGAGACAACATTGCAAAGAATCCAAGCTCCTAATATGAAGTCAAGGGAAAAATTCGAAGGTGCAACGAGTCGATTACAAGAAACAAGCGAACTTTGTGATAGATCAAGAGAGAGATCAAGACAGTCAAAAATGGATTTCGAAAAAGTTCGACGCAACAGGTACGAAAGGTTTATGTTAGCATTTGATCATGTTGCGAATAACATCGACGAGAACTACAAGAAACTTTCGAATAATCCCAGTGCACAGGCATTTCTAAGTCCAGAAAACGCAGAAGAACCTTATTTAGAGGGTATAAACTACAGCTGTGTTGCACCTGGGAAAAGATTCCGACCTATGGACAATCTATCAGGTGGCGAAAAGACCGTTGCTGCACTTGCTTTGCTTTTCTCAATACGGAGTTGTCAACCAGCACCTTTCTTTGTCCTGGATGAGATAGATGCTGCCTTGGATAACACAAATATCAATAATGTTTCCTCATATATCGAGAAACAAACTGAAAACAAGTTCCAATGTATCGTTATCTCGTTAAAAGAAGAATTCTATTCCAGAGCACAGGCATTAATTGGAATTACATGTGAACCTGACCAAGAATGCACAGTCAGCCGGGTGTTTAGTTTGGACTTGACTAAATATTCTGATAGTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
O93308	Structural maintenance of chromosomes protein 1A OS=Xenopus laevis OX=8355 GN=smc1a PE=1 SV=1
Q9Z1M9	Structural maintenance of chromosomes protein 1A OS=Rattus norvegicus OX=10116 GN=Smc1a PE=1 SV=1
Q14683	Structural maintenance of chromosomes protein 1A OS=Homo sapiens OX=9606 GN=SMC1A PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR024704	Family	Structural maintenance of chromosomes protein	Interproscan
IPR028468	Domain	Smc1, ATP-binding cassette domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007062	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278	Cellular Component	cohesin complex	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06636	SMC1; structural maintenance of chromosome 1	-	Chromosome and associated proteins	ko03036	deepkoala