Gene detail

Detailed information of XP_028405718.1 in Dendronephthya gigantea

Genomic Location: NW_021163058.1:678307...683095
NR annotation: XP_028405718.1, uncharacterized protein LOC114528281 [Dendronephthya gigantea]
Species abbreviation DGIGA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D0Z9R0	3'-5' ssDNA/RNA exonuclease TatD OS=Edwardsiella piscicida OX=1263550 GN=tatD PE=3 SV=1
D8MKW4	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia billingiae (strain Eb661) OX=634500 GN=tatD PE=3 SV=1
D2TUZ4	3'-5' ssDNA/RNA exonuclease TatD OS=Citrobacter rodentium (strain ICC168) OX=637910 GN=tatD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005846 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR050891 all species →	Family	TatD-type Metallo-dependent Hydrolase	Interproscan
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10060 all species →	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_028405718.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.