Gene detail

Detailed information of XP_028405926.1 in Dendronephthya gigantea

Genomic Location: NW_021163060.1:1071997...1088826
NR annotation: XP_028405926.1, calmodulin-regulated spectrin-associated protein 1-B-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028405926.1

ATGGAAGGAGATAGTGGATTAGACGTGCTATCAAACGATGGAATATTGGATATTATTCCACCAAGTGAATACGACCCATTTGAGGCCAAATTTTGTGCTTCACTTTTCTGGTTGGTTTTCCATGCCACTGAAGATGGTGGATTAGAAGATGTTCCCTCCCAAGTAACCAGTCCTATTCAAAGGCTTGATAAGAAAAATGGCTTTGTTGTCCATCCTGAGATTGTGGAATTTCTCTGCAAGGGAGAGGTTTATTGTACAGTATGTGCTAGAATATTTCCTGGAAAAGTGATGCTTGCTGGTCATTGGTCGGTTATACAGACTCTGTCTAGGAATGGCGTTTACGTCGTTGATCACACAGACATTGCCGTCACCGATGCCTCGTTAGAGAAAATGAATCCTTTCAACCAGGGTGCGCATATTGCGCTAATGGATGCATTGATGACTGCGTATTCGTCACAAGTTGTCAGTATCCAGAGTGTAGTGCAGGCTGTCAGGCGATTTTCAACATTCAGTGCATCACGTGAACTACCCTTTGACCTCGAAGATGCTCTCCTGCTCTGGATCAACAAGACCAACATGGCTGTGAATGCCAAATACACTCAACCAAACCAAAGTATGACAGGAAAACTTCTGCGCAATCGTGAACAGGTGAAAAAGACTGGACTGAGGTCAGATGACGATACAGTGATAGTATTTCCTATTATTGAAGACCTCTTAAAGGGGCTCTGCAATGGCAGATCTCTCCTCGGAGTTCTGATGTTTTATGAACCGAATGTGATAAATTTTGAAGATATCCGCTGCTCCGCCGAGATCACTACAGAAGATTCAGTCCGTAATCTCGACGTGTTTCTTGGGCTCTGCAGTCAATATTTCTGCACCTCAGTTCTGGCGCTGAAGGTCGAGGATATTCTCTATGGCTCTCCGTCATTGAAGATCAATATTGTCGCTTTGTTAGCTGAGATGTTTTCAAAATGCGAGGGAGATGCTGCAGGAAACGTAAAACCAGAAAAAGAGCATGCGCGAAGTAAAACAGCGTGTTCTCAGAATGGTGAGGTGATGGTTAATGGTGGACACAATGCTGGTGCTGGTACCAGAAGCCATAGCGCACCCATTACCAGAAAGCTGCACAATTCTGAGAAGTTTCCTGCTAGCAACACCTTGCCCGAGTCCGGGAACACGGCGACTGTGAAGAACGCGAGATATCGTCATGACGACAGTGACATTGCGCTGAAGATCCAAAATTACGTTGAGAACGAGTCTTTGAACGTCGGAATCCCATCACGTGAAAAGCATGTGCCAGCGGAGAATATGACGTCAGCAATGGCGACATCATCAAATGTGACATCGACAGAAGTACCACCTATGACGTCATCGTGCTATATGACGTCATCGGATGACCTCACCCCAACTGACGAAAGCACGGTGGAGGTCCAGGGCGTCGTAGTTAAACTGCGTAAGAAGGTTTCGCGGAATGTTGAACCAGGAGGCGGTCACGAAGCGTTGCTATCGAGACGGATGAAGAAGAGTTTGTGTGACTGGAGTCAGGAGAATAGCTCAGAGATGCCATCTCAGACGATCTCTCGTGAAGAACAGATTGATCTTGAATCAAATGAACTACCACCACCGCCAAGCGTCACCCCTGATGATCCCATCTATCCACCACTTGGCCTTACAAACCACCCGGAACATGAATCACCCCGCGACACGGAGCATGATTTCAATCTTGACCTTCATTCTCTACCAGAAATCGACCCCCCTGTGGATATGCTCTCTCCCATATCAGAAACCACAGAACCGGGGGGTTCTGCGGGTAACTCGCTCAATAACTCCATGTCATCAACGCATGAACAGCGAGAAGCATTTCGCCAAAGTTCTGCTGGAGAAAAAAGCTTCAATTTTAATCCACCCAAGGCCCACACCCCACGGAAAGCTGAAAACAGCCGCCAAAGGGATGATTTAATGCCAAGAGGGAGTTATATTATCACGGAAGTTAATCACACTCCGGAGACTGCATTCGCCGCTGGCATTCCCATTGTGGAACGCGAGTCACTAAAGAGTACCGCGCAATCCAGTGATGCTGCTCTATTATATAGATCATCGTTTTCCAATGGAACCAACTTGACCAATGGTGTGTGCGATGAAAAGACGCACGGCGAGCCTTCCGATTTCAATGACCAGCGGTATGTAGATGGAGCCCGCAGTTCCGACCAGCAGTATTCATTTCCTGACAGTGCCCGCAAGTCATCGACTGGTGCAAACCAACCATATCCCACCATCGACATGGTCCGTGCATCTTCAAACGAACGATTTTCAGATGGTGCCCGTGAACAGCCGAATACTGCTGATCAGCGTCATCATCACAAAATTTATGCGCATTCGAACAACAACGATCAACGTTTGAGATCAGGAGGGGGTGAACAGGGGGCAAAAAGTGGCGCCCAGGGGGACTTAGAATCAGGAGACCAGCGGCATCAGGTGGATCTTCGGTCAGACGGAAGGGATGACAATCGTTTCCTGACCTACACTAAAAAGAAAAGTTCTCGTAAAGAGAACGGCACAGAGTCTGGCTCGTCTGACGCGAAATTGTGGGTGAAAGATCAAGGTGAACAGATTCATAGAGAGAACAGTTTAGGAACAGATCGTGAGGATGATGGTGATACGGGACCATTATTGGTATCATGGTTTGGTCACGCGAAAAGTGAGGAAGAATCCATGCGTTATGGTGAAGATCATTTAGCCTCGGAGTCCCGAGTGAAAAAGACAAACTGGGGAGAAATGGCATTTGAAGTGAATGAAAGTTCAGATGTGATAAAAAGAGGTCCATCTAACGATTCATCCAAGCCTGATCCTGTGTCACGTGAACTGAATCTACTGCGTTTGCGATTGGCTGAAAAACAACGCGATATCGAGGCTCAAAAACAGCGAACCAAAGAACAGCTTGATGAAGAGAGAAAGAGATTCGGACAGAATGTATTTTGGTTGGCTGTAGGGAAGGGTAGAGAAAGAAAAGAAGGAAATGAGGCAAACTCTCTCACAAAAGCCTCTCAGCACCGACAAGATTTGTTGGTCAACCAGAACAGCAACGTGCAAAGGTCGGAACCAACAAACAACAATAAAGTCGCAACCTTTACTAAACAGTCATCTTTGGATGGGGACCTCCCCCCGTCCATGGGCAGATTACAGGATAGGAGCTTTGACATAAAAGCGAACAATATAAACAGCTCTAAACCATTACCCGAAGACAAAGCATCGCAGCGTTTCGTCGAGAATCGTAATCCCTCGTTGGAACATCGTGTGACTTCCGTGGAAGATCAAAACACGTCGGAAGACGTCGTACAATTCCGTTTATCCCGGCAAGCGCCAACCAAAACTCTTACCGATAATTCAGATTTACAGAATTCTGAGAAACCAAAAACTCCTGTATTAAATTACAAAAGTAGGATGAATGTACCGGTTAGCATCCAAGCGAAGCCAGTTTCAGAGAACTTTGCGGATTCTCAGAATTCTCAGGATTTGGCTGTTGATGGATTGGGGCCGGATGAGGGTGAATGCTCAGAAGTCCAGTCACAACGCAAATGCTGGGATACAGGGACAGCCAATAACAATGAATCAAACGCACGTTTGTTTGGGAAGAGCTCAAACAGCAACGTGGAAGCACCGCAGAGCCTGGTAATGAGCGGTTCACCTGGAGTTTCGGATAGTTCGGCACAAGACGAGCAAAGTCCTGAGGGAGGGAGTGAGAGTCCTCATTCGTCGCCGGTTGAAGACGATCGTGAGACGCCCAAGAAAGGCCTGGCACTATTCATTGGCGAAGAGAACGCAGCAAGAAATAACGATGGTTTGACTCCGGAGCAACTAAGAAAACGAGAGAAATTTTTAAGAAACAGACAGCAGAAAATTGAAGAGGAAAAGATTAAAAAAGAAGCACTCTTGGAGAAGAAAAAAAGGAAAGATGAGAAGATGAGGGAGATTCAATTGAGACGTGAAGAAGAAGAGCAGAGCCGTCAAGCGAAGCTTCAGGAGAAGAGGCACCAAGCAGAACATGCCAAGCAAGAACGAGAGAGATACGAGTTGAGGAAGAAAGAAAATCTACCTAGAACGAACATTGTTGATGGGGGTTATGCTAGTATATCGCAGGGTATTGATAGAGTACCTGGTGGTAATGCTGGATATAACAAGACAACAGTTGATATTCTGGGGATTGAAGGTGGTAAGGGTGGATACACGAGGACGGTTGCGAAGACTTCGGGAGAGAATGCGTTTGAGATTCATGCACCCGCACAGAACACAACATCTTCAGCTTTTTCGGGTTTTACAGGTGTCCAGTCCTACGTCAAACCAAGCGGGAAAACGAATCGAAAATTAATAATCAATGCAATCTCGCACGTCTGCCTGCCAGGAGTTGTTAACAAGGACACAAAGGATAAATGTTTACAGGCCATGACGGAATCCAGCGCTCAACATTTTCTTATCCTGTTTAAAGACGGCTTGAAATTCCGCGCTCTTTACTCGCTGGACCTCGAAAGCAATCAGGTATTGAAAGTTTACGGAATTGGTCCACGCTCAGTAACAGAGAAAATGACTGAACAGTTATACAAATACAACAGTGGTGGCAAAGAATTCTCAAAAATTCCTGCCAAAGGCTTTTCCCTGTCGGTAGATGGGTTTACTCTGCACAAGAGCTGTTGGCAATCAAATAAACCACCAGTTGCTTCAAAAACGTCCTCGAACTTTAAACAGTCCTCATATAGACCGACGAGGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q6IRN6	Calmodulin-regulated spectrin-associated protein 1 OS=Xenopus laevis OX=8355 GN=camsap1 PE=2 SV=1
Q5T5Y3	Calmodulin-regulated spectrin-associated protein 1 OS=Homo sapiens OX=9606 GN=CAMSAP1 PE=1 SV=2
A5WUN7	Calmodulin-regulated spectrin-associated protein 1-B OS=Danio rerio OX=7955 GN=camsap1b PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11971	CAMSAP_CH	CAMSAP CH domain	Domain	Interproscan
PF08683	CAMSAP_CKK	Microtubule-binding calmodulin-regulated spectrin-associated	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038209	Homologous_superfamily	CKK domain superfamily	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR022613	Domain	Calmodulin-regulated spectrin-associated protein-like, Calponin-homology domain	Interproscan
IPR014797	Domain	CKK domain	Interproscan
IPR011033	Homologous_superfamily	PRC-barrel-like superfamily	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR032940	Family	Calmodulin-regulated spectrin-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21595	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0007026	Biological Process	negative regulation of microtubule depolymerization	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0036449	Cellular Component	microtubule minus-end	Interproscan
GO:0051011	Molecular Function	microtubule minus-end binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17493	CAMSAP; calmodulin-regulated spectrin-associated protein	-	Cytoskeleton proteins	ko04812	deepkoala