Gene detail

Detailed information of XP_028407518.1 in Dendronephthya gigantea

Genomic Location: NW_021163011.1:6354644...6362664
NR annotation: XP_028407518.1, LOW QUALITY PROTEIN: host cell factor 2-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028407518.1

ATGGCGGCCGTTTCGGCCATGAAATGGAAGCGTATATCCAGTTCTGCAGGCCCTCAACCTCGTCCTCGCCACGGCCATCGTGCTGTAGCAATACGCGAACTTATGGTTGTGTTTGGTGGCGGTAATGAGGGAATTGTCGATGAACTTCATGTTTATAATACTGCTTCAAACCAATGGTTTGTGCCTGCTATACGAGGAGATATTCCTTCCGGATGTGCAGCCTATGGCTTCGTCTGTGATGGAACGAGGCTTTTTGTTTTTGGTGGAATGTTGGAGTATGGAAAATATTCCAATGAGTTGTATGAACTTCAAGCCACTCGTTGGGAATGGAAGAATCTAAAACCAAAACCAGCTAAAGGTGGAATAGTTCCATGTGCAAGATTGGGTCACAGTTTCACTTTGGTTGGTCATAAAGTTTATTTAATTGGAGGATTAGCAAATGACAGTGAAGACCCCAAATGCAATATCCCAAGATATTTGAATGATCTTTTTGTTCTGGATTTAAAAACATCTCAAAATCTTCAATGGGAACTTCCTGCTCAGTATGGCAGTGTTCCCTCACCAAGAGAATCACATACGTGTGTGTCATATACCAAGTCTGATGGAAAGAATCAACTTCTTGTTTTTGGTGGAATGAGTGGTTGTCGTTTGGGAGATTTATATCAACTTGATATTGAAACAATGATGTGGACAAAACCAAAGGTTTCTGGTATGATTCCTTTACCAAGAAGCCTTCATTCTGCAACTGTTATTGGCAGAAGAATGTTTGTCTTTGGTGGCTGGGTTCCTGCTAATACGGATAATGATGTTAAAGGAACTCAGAATGAGAAAGAATGGAAATGCACAAATACATTGGCATGCCTAAATCTAGACTCAATGAATTGGGAAGATATGTTAGTCGATGAATCAGAGGAAAATTGCCCTAAACCAAGAGCTGGTCATTGTGCTGTTGGGATAGGCAATCGACTCTATTTATGGAGTGGAAGAGATGGATACCGGAAAGCTTGGAATAATCAGATATGTTGTAAAGATATGTGGTTCTTAGAAACAGACAAACCTTCTGCTCCAACCCGTGTTCAGCTGGTTCGTGCAAGTACTAACACATTAGAAGTCTGCTGGGGACGTGTTGCAACAGCTGACTCGTATTTGCTTCAAGTTCAAAAATACGAAGTTCCCAACACTAATTCATCAATCAATTCAGGCGTGAAACTACCTAACGTGAAACCAGTAACAACACCGTCAAAGATGTCTGTGAGCATGCCGCCCAAATCTAACGTGCAATCCATGTCGAAATCTCCCATTTCAGCTGGAGCCTCGCTGATTAAGGTGGAAAATGCCGATGAGCCTAAGTCGCAAGTTCCAAATCAGAAACCTGCAGGAAGTCCACAAGTTAAACTAGTTCGAGGTACAGTGAACCCTCTCCAGGGTGGTGCTGGAAATTCCCAAGGTGTATCATTAGTTCGAGTTCAGACTAATCAAGCTCTGGCTAAATCCGTAGGAGCACCTACCTCTACAACTTCTGTTACACGAAGTACTTCGAAACCACAACAGATTGTAATGGTCATGTCACCAAGTGCAAACAAAGGGGAGCTAGGAAAAGTAACATTTACAACTACACAAACTGTCACGTTAGCGCAAGGACAAAAATCGTACACTGCTGCTGAGTTGAACCAAATTATTCAGTTATCACAGCAGGGAACTGCTTTGAAAATTGTTTCTATGACCAATCAAGCTTCGTCTTCCGCAGATACGCCGTCACATGCTGGAGTGAAATTTGTTCAACGTGGAGCGAATGGACAGGTTATCATAAAGATGGTAAACACAAGTCCATCAACTTCTACAACCACAACTCTCCCACACCCTCCTCTGCTGTTCAGGGTAAAATACAAGACAATGCGAAAATAATGTGAAAAAACGAATACAAAATCAGTTGCTGATTCATCAACGTCGTCTACAGTCTCATCTGCGAGCACCACGTCTGCAGATTCTATAATAACCTCGAGCGCACAAGTTACTAGTTCAACTTCTCCGGTTGTATCATCAGCTACCATACCACGTTTAACCACAGCTTTGACTACCACGTCATCAAACACACAGACAACGAGTAAGGCTAATGAAACTGTATCAGATTCAACCACAGTGACAAATACAAGTACAACCAAAGTTACTTCGACTAGTGCTTCTGTAAATACTTCGGACGGTTCTGGAGGTGCATCACAAAGTGATACTCCAGATCCTAAGGTATCCTCTAGTACGAATCCGTCAACGTCTAGTACTACTATCAATAAACCTACAATATCCACCGTAAATACTGCTGTAACATCGTCGACAACATCGGATAGCCCGAGCAAACCACCCGATAAGCCGTCGGACAAAAGTGCTGATACTCCTGATTCTTCGACACCCTCATCAACGACAACATCTGAACCGTTTTCAACACCAAAAACTTCTTTACCAACAACTGTAAATAGTTCCGTGCAAAACACGCTTCCATCACAAACTACATCTACCTCAACTACTACTACAGCAACCTCTGTTATGGGTTCAATCTCGAGAAACTCGGACTTACAAAAGATTGCAACACTTGCAGCTGCTAAAACTGAACTTGAGAATCCCGCGAAAATTGTCTCACGACCAGTCACCTGTGGCGGTTCTACCACTCAACAAGCAACAGCTCCAATCACTACTACTTCCGGTAGAGATATGGGACCCCCTGCATCCGCTGTAAATCCTCCAGCGAAGGTGAAACCTGCTACAAAAACGCCCCGTCAACCACAAACAAATGGTGTACACGTCAACAAGATCGGTGGAAACCAGTGGCATGACGTTGGCGTCATTAAAGGAACATCGTCAATTGTGTCGCATTATTTCATTCGACGGACGGGAGATACACAAAAAATTGTGAACGAAAATCAGACTCCATCAGGAGTAAAACAGGAACTCCTTCCAGGAACGGCGTACAAGTTTCGCGTGGCAGGACTGAATTCGTGTGGCCGTGGTCTATTTAGTGATGTTTCTGCATTTAAAACATGTTTACCAGGATTTCCTGGTGCTCCATCGGCCATTAAAATCAGCAAGAATGCAGAAGGAGCACATCTCTCATGGGAAGCACCGACAAATGTCGCTGGCAATGTAAACGAATATTCAGTGTATCTAGCAATTCATAGTCAATCCAGTGATAGCAAAGAAGTCAGTGGAATTGGCCCTACACCAGTACAATTAGCGTTTGTACGTGTTTATTGTGGTCCTAAACCTTCGTGTACTGTCAGTACTGATACTCTAAAAAATGCTCACATCGACTACTCCACGAAACCCGCTATTATATTCCGTATTGCTGCCAAAAACGACAAAGGTTATGGCCCTGCAACACAAGTCAGATGGTTACAAGATGCTAAGGACCTGAAGGACCAAAATAGTTCAAAAAGTGTAGCACAAAAACGAGCAAACGTAGAACGACCAAGCGAACCAGCGAAGAAAATCAAAAAGGAATAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q9Y5Z7	Host cell factor 2 OS=Homo sapiens OX=9606 GN=HCFC2 PE=1 SV=1
Q5RKG2	Host cell factor 2 OS=Rattus norvegicus OX=10116 GN=Hcfc2 PE=2 SV=1
Q9D968	Host cell factor 2 OS=Mus musculus OX=10090 GN=Hcfc2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13854	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR043536	Family	Host cell factor	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46003	HOST CELL FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035097	Cellular Component	histone methyltransferase complex	Interproscan