Gene detail

Detailed information of XP_028407601.1 in Dendronephthya gigantea

Genomic Location: NW_021163071.1:1016070...1024292
NR annotation: XP_028407601.1, DNA-directed RNA polymerase, mitochondrial-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028407601.1

ATGATCACGGTGAGAAGTGTAAACCGTGCGAAAATATGTTTTTCTTACTGTAAACGATATTTATTTTTTGTGAAGAAGTGGGAGGAATCTATTAAATTCACTAAACTCGCAAAATATGTGAGTTCTAGTGCGGCACAATGGCTAATACCAGACCAAAACAGCCTGTTACTTCAAACAAAAACATTGGTGAACTTACATTCAAGACAAAACACAACTCATTTGCATGTATCGAGAACTCAATATAATGATAATGGGATCAACAAAGCTGATAACTCAGGTGTCTTAGAAGAGCTAAATGGAGTTGGGGAGTTGGGGTTGTACTCTGAAAATCATGCACAAGAGTTTGAAGGATTACCAAGTGTAAAGAAAAAAAGAAGTCAGAAGAAGAATGATAATTTTATTGATGAAGCAGCCCGACTTGCAGAAATTGATGCATATCTCTTTTGTGGAAATGTAGATGGAGCAATAGAGGTCTTCAACCGATGCAGGCGCAAAGGACACAAGTTTGACATTTCTACATTCAATAAAATCCTCCATGGTCTTGCAGCTAAGAAACGAGTTCTGGACTGTCAGGTTTTCTTTCACAATATGGCTGGAGATAATGTCAAGCCTGACATACAGACATATGCTGCAATGCTGGATCTTTATGGACAGTTTAAAGATGCGAAAATGATAAAAGAAATATGTGCTAAAATGAATAGCCAGGGTCATAACATAAAAAAGATCTTCAAGAAATCCATTTTAACAAGGGAACAAGCGAAACGCATACTAGAAGCCATACGGATGGTCTACCCAAATTATGAGGCTGAAATATGTATGGACACACGTTCGACCTACATTTCACCTTTAGTGCAATCTCTCCATGAAGAAAATAAGAAAAATATAGAGTATAATGTACCTGAAACACTTGTGAGAGAAGTTATGGAGAACTTCGAGCAACAGTTGGAACAAGAGAGAGTCGGGTTTGGGACCATAAAATCGGTGGAAAAGAAAAAAGACGTGATGAAAAGCAGCGAGGATAATCACAAGGGTTTTGATGAGATACAAACAAAATGGAAACAGCGACTAACCTCTGCTATTGAACGAGAAATTGAGCTGGTTAAGGCGGGAAATACAGATAACAAACGAAGTAAAACAGGACCATTTACACGAATAATGGTACCGTGTGAGGAGTACGCTGCACTCGCAGTCGAGACGATAACTGGACCAGTATGCAGCCAGTCGTACGGAGCACCACTGAACTATCTCTGTTGGCTTGTTGGAACACAAGTTTATAATAGGCACGCCGTTAAACATAAAGAAAAATCCGGCGTTGTTGATAAAATCAGAGTTATGTACGAGCAATTTGCAAGACTTGCTTGCGATCCCGAGGCATGTAAAACGATGAATCCGAGGGAGATGTGGTTACAACTGGAAAAATCGACGCCTTATGAAGGTTCAATATACTGTGATATTACACCATGGCCTACCTCGATTAGAGTATTGGTTGGTTGTACGCTGATTGACATGCTTATCAGAGAATGTGAGACAGACGCAAATATGTTCAACCACAAGAAAGAGAAGATCACTCCTGCTTTCTTCCATACCTATGAATACGAACACACCACGGTATCAGGTTATATCAAGGCACATCCGAGTGTAATACAACTGTATCAAAAACATGTCAGTAATTGTGGAGATATCTCACAACCTGCCAGTAAACTGCCAATGTTAATTCCCTCCAGACCGTGGACCTCAATCACTGATGGTGGACACTTGGTGTTCTCCGTTCAGTTAGCACGAGGTCAAGACAAAACAGCAGAAAATCTCACCGCTTTGGAAGAAGCTTGCCAGGCGTCGAAACTGAACACGATATATGACAGCCTTAATTGTCTCGGGCTGTGCGGGTGGAGAGTAAATGGCAAAATACTTGATTTAATGATTGATATATTTAACGATAAAGGAAATGAGCTACTAGAGATCCCAGGACCTGATTTACCGAAAATACCAGAGTTCAAGCCTGAGTTAAATGATCACCCAGAGTTATACACAGCTTTTCTTAAGGAGAAAACCAATGCAAAGAAAGAGTTACACGAGGCGCATGCGCTGAGAATGGCTATGTTGTACCATCTCTCTGTGGCAAATCATGTCCGAGAGAGGACTTTCTGGATGCCATGCAACTTGGATTTCCGCGGCAGGGCATACCCAATACCACCCTATGGCAGTCATGTAGGTGACGACTCTACACGGGGTGTTCTCCAGTTCTCCAGAGGAAAACCTCTCGGGCCCAAAGGCCTGGACTGGCTGAAAGTTCATTTGGTCAATTTACATGGAAAGTTGAAAAAAGCTTCATTGAAAGAACGAATTGACTATGCCGATAAACTATTAGACGAAATTCATGACTCAGCTGATTATCCACTCACGGGTAATCGATGGTGGCAAACGGCTGATGAGAAATGGCAGGTGTTAGCGACATGTATGGAGATATCAAAGGCGATCCGTTCTGGTGATCCGGAGAACTTCATTTCTCATCTGCCAGTTCAGCAGGATGGATCGTGTAATGGTCTACAGCATTATGCTGCGTTAGGTCGCGATGAATATGGCGGGAAACAAGTGAATGTGCTTCCTTCAGAAAGACCTGAGGATGTTTACTCAGAAGTTGCGAGGTTGGTGGAGAAGATGTGTGAACGCGATGCGGCAAATGGGGTGGAAATTGCGCAGCAGTTAGTTGGTAAAGTCAGTCGTAAGGTGGTAAAACAGACTGTTATGACTTTGGTCTATGGCGTGACCTTTGTTGGGGGTCGTAGACAGATCAGTGGACAACTGGATGATCTTGGACTGGCTCCCAGCGTGGTGTGGAAAGGTTCATCTTACCTTACAAGAAATGTGTTTGCAAGCATCAGAGAGATGTTCCATGCTGCTAAAGATATCCAGGACTGGTTTACGAGCGCTGCAGCTCAAATCGCATTAAGTGGTCATTGCGTTGATTGGATTACCCCACTTAATCTTCCCGTGATGCAATCTTACCATAGAATGACCAAACGTGAAGTAAGAACTCCACTTCAGCACATCAAAATCCGTGTACCTGGCCGAGAAATGTTACCAAACCTCGAAAAACAAAAGGGTGGATTTCCACCGAACTTTATACATTCACTGGACTCATGTCATATGATGCTGACTGCGCTACATTGTCAGAAGCATGGTCTGACTTTCACGTCTGTCCACGATAGTTTCTGGACCCACGCAGCTGATGTGGACACAATGAATAAGATATGTCGAGAACAATTTGTCTCCCTACACCGTCAGCCCATCCTTGAAGATCTGCGCAACCATTTCGTTAAGAAATTTGGAAAGAAAAGGATGCGTCGACCATTAAAAAATTCAACCCGTGACGAGGTTCATTTCGGCCCACTTCCGGAACGCGGGTCGCTTGATCTCAACGAAGTACTTCAATCAACGTACTTCTTCAGCTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8BKF1	DNA-directed RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Polrmt PE=1 SV=1
O00411	DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens OX=9606 GN=POLRMT PE=1 SV=2
P13433	DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPO41 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00940	RNA_pol	DNA-dependent RNA polymerase	Family	Interproscan
PF14700	RPOL_N	DNA-directed RNA polymerase N-terminal	Domain	Interproscan
PF13812	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002092	Family	DNA-directed RNA polymerase, phage-type	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037159	Homologous_superfamily	DNA-directed RNA polymerase, N-terminal domain superfamily	Interproscan
IPR029262	Domain	DNA-directed RNA polymerase, N-terminal	Interproscan
IPR046950	Domain	DNA-directed RNA polymerase, C-terminal domain, phage-type	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10102	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001018	Molecular Function	mitochondrial promoter sequence-specific DNA binding	Interproscan
GO:0006390	Biological Process	mitochondrial transcription	Interproscan
GO:0034245	Cellular Component	mitochondrial DNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10908	POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial	EC:2.7.7.6	Mitochondrial biogenesis	ko03029	deepkoala