Genomic Location: NW_021163071.1:472546...478004
NR annotation: XP_028407770.1, E3 ubiquitin-protein ligase TRIM71-like [Dendronephthya gigantea]
| CDS | ||||
| XP_028407770.1 | ||||
| Transcript |
| - |
| Protein |
| XP_028407770.1 |
| Uniprot term | Description | |||
|---|---|---|---|---|
| E7FAM5 | E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1 | |||
| Q9ESN6 | Tripartite motif-containing protein 2 OS=Mus musculus OX=10090 GN=Trim2 PE=1 SV=1 | |||
| D3ZQG6 | Tripartite motif-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Trim2 PE=1 SV=2 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|RING |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17170 | DUF5128 | 6-bladed beta-propeller | Repeat | Interproscan |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | Domain | Interproscan |
| PF01436 | NHL | NHL repeat | Repeat | Interproscan |
| PF00630 | Filamin | Filamin/ABP280 repeat | Domain | Interproscan |
| PF00643 | zf-B_box | B-box zinc finger | Domain | Interproscan |
| PF12126 | DUF3583 | Protein of unknown function (DUF3583) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017907 | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR027370 | Domain | Zinc finger, RING-type, eukaryotic | Interproscan |
| IPR047153 | Family | TRIM45/56/19 | Interproscan |
| IPR000315 | Domain | B-box-type zinc finger | Interproscan |
| IPR001258 | Repeat | NHL repeat | Interproscan |
| IPR003649 | Domain | B-box, C-terminal | Interproscan |
| IPR017868 | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR014756 | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR001298 | Repeat | Filamin/ABP280 repeat | Interproscan |
| IPR011042 | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR021978 | Domain | PML-like, coiled-coil | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR25462 | BONUS, ISOFORM C-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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