Gene detail

Detailed information of XP_028407887.1 in Dendronephthya gigantea

Genomic Location: NW_021163074.1:218096...227566
NR annotation: XP_028407887.1, FYVE, RhoGEF and PH domain-containing protein 4-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028407887.1

ATGCAGAAAGGCAGCAGTACAGGAAATCTACCAGCTAGTAATAATGTAAACAAGTTCAAAACTTTTTATGAAAGTCTAAGCACAAGTGATTTAAAAAATAATGTGCATCCACCTCACAACCAGGATCTTACACCTCCTGCCAAACCAGTTCAAACACCAGATAAACCGGATGTTGAAACAGACCACCAAGACCAAAACAGTAATCAGACTTGTAAAACACCAAAACCAGCTGTTCCTCCAAAACCAATTCTTGCAAAAAATGGTAAGCATAAAGGTTTTAGTTGCGATTCAAGCCCCCCAGACATTGCTCCTAAACCAGTGAAGAAAAGAGACAGTGAAGAACAGTGTGGTAAACTAAGGAGTAACCATGAACAAGATTTTTACCAAAATGGTGATCAAGACCAGACAGATGAGGTTATTATCAGAGAAAAAACAGGACTGGGTGATGATGCTAAGATGGGAGGTGGTGAAGAAGGTCTTGAAGACCAGTCAGAACAGGTGCTTGTTATTGAAGAAAAAATAGGAATAGATTTGGATGATGAAATAGAAGGTGGTAATGATGAAAATGGTCAAGAAACGGTAGAAGTAGATGTGGATGACAATGTCGAAGCTAATGAGGATGGTGATGAAGAAGATGATGAAGAAGTTGATGATGAAGATTATGGATGGGATTCAGATGAATTTGAGAGTGAAAATGACAGTGATGATCATGATAATAATCTCGCAGATAAACGACAAAGTAGAATTATTTTTGATGAATTAGAGCATATCCCTGATCTGAATTTTCTGGATGCACGGAAAAAGAAATTGTTTAATATCGCAAAGGAAATTCTGACCACTGAAGTGACGTACGTGAAAACACTCAAGCTCCTTGATGAGGTATTCCACTTCAGACTAGAGAATGAGTGCAGAGCAAAAGGCATCGTGCCAAAAGAAGTACTGTTAGAAATATTTTCAAATATTACTGCCATTAACCAGTTTCATCGAGATTTTCTTCTGCCAAAACTTGATGAACGAATGCAAAACTGGGATACAAACCCTCGCGTTGGTGATATTTTTAACTCCCTCGCACCATTTCTGAAGATGTATGCTGAGTACGTCAAAAATTTTGACCAGGCAATGAGCAGTTTGTCGAGATGGAAACTTAAATCTCAGAAATTTTCTGCCATCATTGACCAAATACAGAAAACCGACAAGGAATGCAACAATTTAACATTGGAGCATCACATGCTTGCCCCTGTACAGCGAGTTCCACGCTACAAACTGCTGTTGACAGATTATATCTCCAAGTTACCCGAGGATTCCAAAGATTTAGAGGAGTCAAAAAAGGCACTCGAGATCATATCTGCTGCGGCGAACCACGCTAATGACAGCATGAAGAAAACAGAACGCTTCCAGAAAATGTTAGAAATGCAAGAAAAATTCGGCGATGGCGTCAGCATTGTAACCCCGAGTCGAGAGTTCATAATGGAAGGTGAATTGATAAAGATTTCAGCACGAAATGCTCAAATTATGACAAGAATTCTTGTTTTGTTCAATGATGCCTTATACTATTGCACTAAAGTCCCAACTACAGGTAAATACAAAGCGAAGCAAACACTGGAGTTGTTGTCGACCTATCTTGGGGACGTCGATGAAGAGACAGAGAACCGTGAACTTGTTTTCCGAGTTTGTAGCAAAAGCAAAGTGGTCGAATTTAAAGCGACGTCGGTAGAGCAGAAAGAAAAATGGGTATCGACTCTTACAGCAGCCATTAAGAATGCAGTTGACAGGAATAGCACCTTTGGCCGCGAGGTGACTCTGAATAAAGATGATATTGGAAAAATCGCGCCAACCTGGGTACGAGATGACGCTGTCACCATGTGTATGACGTGTACGATTCACTTCACCGCGATACGAAGGCGTCACCATTGCCGGGCTTGCGGTAAAATCGTGTGCAATAGTTGCTCAAGTTATAAAGCTCGACTCGAATATGACGATAACAAAATTAATAGAGTTTGTGTGAACTGTTACAAAATACTTGCTCCCGAAGAAACAAATAAACCGGAGATAAAAAGGAGAAGGCGTAAGGTTCAAAAGTTTGCAGATTCTGTATTAAATGGATATCTCAACTTTAAAAGTGATAGCACGAAGGCATGGTCAAAGCGTTGGTGTAGGCTTGGAGATGATTTTACTCTTCATGTTTTTAAGGCGAAGAAGGATGTAAAAGCTCAAACTACGATCCCAATGCCTGGTCTTTCGCTGCAGGATGAAAATGTGTGCGACGAAAATGATAAAAGTAGAAAACACGTCTTTAAAATTTTGCACCCGATATATGGTTCCTTTTTCTTTGAAGCCGAGAACGACGAGGTGTTGGAGAAATGGTTAGAACATATTCGATGTGCGATCGAAGCAGAACCGTATCCTAACAGGAACTCAACCTCAAGTCAACCAACGCCACCCCCAACCCCTGGCTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q96M96	FYVE, RhoGEF and PH domain-containing protein 4 OS=Homo sapiens OX=9606 GN=FGD4 PE=1 SV=2
Q91ZT5	FYVE, RhoGEF and PH domain-containing protein 4 OS=Mus musculus OX=10090 GN=Fgd4 PE=1 SV=1
O88387	FYVE, RhoGEF and PH domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Fgd4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan
PF00169	PH	PH domain	Domain	Interproscan
PF00621	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035899	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219	Domain	Dbl homology (DH) domain	Interproscan
IPR051092	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005089	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007010	Biological Process	cytoskeleton organization	Interproscan
GO:0046847	Biological Process	filopodium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05723	FGD4; FYVE, RhoGEF and PH domain containing 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala