Gene detail

Detailed information of XP_028407947.1 in Dendronephthya gigantea

Genomic Location: NW_021163074.1:1026800...1039324
NR annotation: XP_028407947.1, helicase ARIP4-like isoform X3 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028407947.1

ATGGACGAAGACAGTTTAAGCGATAACAGTGGGAATCTTGAGGACTCTGATGATGATGGTAATGACGCTGTTTCTTCCACATCTCATGATCCAATTCACCATGACCTGCGTCAAAGTGATGGTGCACCCAAACAAAAAAAGAAGCGAAAACGTAAAGAGGGTAGAAAACGTATCCGAAAAATTCTGTCTGAAGAACAGCTTGACAGTGAAACTCTGAGTGCTCAGAAAGAGGAACAGGAAAGGCTTAGACGTTTGGAACTACAGAAAAGTTTAAATACAGCAACACCAGCAGCTAGGAGTGCTTCACCTTTAGACAAAAGCTCTCCACATTTGGAGACAACTAATGTGCCAGCACAGCCTGTGGTTGTTGATGTGCCACGTAAAGACCCAGATCGGATAATTGTTATCGATGATAGCGACGATGAGTGTGATATTATTATTGACAAGCCACAGCCTTTATCGGATTGTGTGATTATTTTGGATTCTGATTCGGAACATTCAACAGAGGAGGAGAACGAGGCAGATGAGGAGCCTGAGAATAGTGGAAGTCATACTAATGATGATGTCAACCAACCTGATGTTCATGGACGAGTTTTGGTGAATGTTAATCACCCACCAACTGAACCTGATATATTTCTAGCATCACATCTTTGTAGCGTGGCCAAACCCCACCAGATTGGAGGAATAAGGTTTCTTTATGACAATTTGGTGGAATCTTTGTCTCGCTACGAAGTTAGTCCAGGATTTGGATGCATCCTAGCACACTCAATGGGTCTGGGAAAAACATTGCAAGTGATTTGCTTTATCGATGTCTTCCTTCAATTCACGAAAGCCACTAAAGTTTTGTGTATTGTTCCGATGAATACCATTCAAAATTGGTATAGTGAGTTCAATTTATGGCTACCAGAAGCTCCATCCAGTCAAGCTAGGGAGCAAACATCTGAGGAAGGTTTGATGAAAGAAGATGGTAATCAAGAAAAGCAAGGAAGAACATTTCAAGTATTATTACTTGGTGAAAGTGTGAAAACTACTGTCGCGCGATCAGCTTTGATAGGAAATTGGGAGAAGAACGGTGGCGTGCTGCTTATGGGTTACGAGATGTATCGAATACTGGCTATGTATACGCCATCGCTGGTCAACAATACTAAACTAACTGGAAGTAAAAGAAAGAGAACTAACACTAACACAACGGAGGTTATTGATCTTGATGAAGAGGAGAAAAATATGGATCTGTTGCTTGAAGTGCAGAAATCTCTTTGTAAACCCGGCCCCGATCTTGTTGTATGTGATGAAGGCCATCGTATTAAAAATAGTCAAGCAAATATTTCGCAAGCTCTAAAGAAAATACACACGAGACGGCGTGTAGTACTTACTGGTTATCCATTGCAAAACAATTTGATGGAATATTGGTGCATGGTGGATTTCGTTCGGCCTAATTTTCTGGGAACCAGGCATGAGTTTTCAAACATGTTTGAAAGACCTATTGTTAACGGGCAGTGTGTGGACAGCACAGCATCGGATATCAAATTGATGCGTTTCCGAGCCCATGTTTTGCACAGTCTTCTGGAGGGCTTTGTACAAAGGAGGAGCGAAGCAGTTCTCACGAAGACATTACCCGAAAAAGAAGAATATGTTATTCCTGTGAAGATGACGTCTGTTCAAAAGTCTTTATACAAAGCATTTGTGACTTCAGCGATGCGTTATGTGGGTTATATTAATCCTATTAAAGCATTTGGGATATGTATTAAGATTTGGAATCATCCAGACATTCTGAAAAACTATCTTGACAGTAAGAAAGATGCAAGCAGAAATGCCTCGCCTTTGACTGTATGCGACCCAGACTTAGATATTGGAGTTAGCGTAAGCAAGAAAACGAAAGATTCAAAGAACGATGCTAAACTGCAGCTAAACACCAACTCAGATACCACTATGTGTCCACCTGATCCAAAGGCAATAGCCAATGTTTCTGACTGGGTTGGCGACTTGATGGACAATTACAAAACTGGTGTGTTACAACATGGTTCGAAGTTAGTCATTTTGATGGAGCTCATCGATAAGTCTCTTCAAATGGGAGATAAAATTCTCGTATTTAGCCAAAGTTTATCCACACTTAGCCTCATCGAAGATTTTCTTCGAAAACGTGTCGTTCCACCATTGCCATCTCAACTCATGTTTCAACCTGTTCACTGGGAGAAAAACAAGAACTACTACCGTCTAGACGGTGGTACCTCATCACAAGAGCGTGACAAGCTAATTACGGCGTTCAATTCAAAAACAAACCAATCAGTTTACCTTTTCCTGTTATCAACAAGGGCGTGTAGCTTGGGTGTGAACTTGATTGGTGGTAATAGAGTTGTGATATTTGATGCTTCGTGGAATCCATGTCATGATGCACAAGCTGTTTGTAGGATATATAGGTACGGGCAAACGAAAAAATGCTTTATTTATCGTTTGGTCAGCTATGGTACTTTTGAGAAACGAATGTATGAACGTCAAATAACAAAGGAGGGAATGTCAGATCGAGTTATTGATGAACTAAATCCCGAGGCAAATTTGACGAAACTGGAAGTGATGCATCTTTTCAAGGAACAGGGCAGTGACGACGAGGATCCCAGTCTTAATATTTCAGCAAATGCATTTCCTGATCCAGTCTTGAATTATGTTTGTGGGACCTGTCATGAATCCATTCTTGAGACACCATTCAAACATAAGCTGCAATCGTCACGTAAATTAAGAAACATTTTGACAAAAGCAGAAAAACGCGAGGCAAAGAAAGGCTATGAACGTGAAAAGCGAGCAATCGATTCTGCAAACAAATACAGCTCGTCTTCCACCGTCTGTTCACCATTAGTAAGGGAACAAATCAGGAAGGAAGTGATAAATCGTCCTATTGGTCATGTTAAACCGATACAAAGTGTCCAGGCTAGTGCCAGTCCCCCTGTGGGACAACCCGTTTCGTCTCTTCCTCTACCGGTTCAACCCTATGCCAATCCCTTCAGAGCTGACTTACCTTCTATGGCTTACATGGCAGGCATGACTCTTCCACCTCTTCTCAATAACAGATTTTACCAAACGGGAGAATTGCGACCGTTGTCCCCATACCCTAGTAATTTCCCGTTGCCCTACCCTTTCCCCGAAATCAACCCTGACTTACGACCATCAAGTGGAATCCGACAACCAATAGTCGTTGATTTATTAACCTCTCCTGAAGAGAAGTCCGATGCAGCAAATAAAGTAGAAACTACGCCTAAAAGTGCAGAGAAAAATGGAGAGGCAAATAATACTGCCAATAATGCCGGATCTTTTCCACTTATCGTAAACGACGTTGGATCTGTAAGCAACGGAAAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
A4IHD2	Helicase ARIP4 OS=Xenopus tropicalis OX=8364 GN=rad54l2 PE=2 SV=1
Q9Y4B4	Helicase ARIP4 OS=Homo sapiens OX=9606 GN=RAD54L2 PE=1 SV=4
Q99NG0	Helicase ARIP4 OS=Mus musculus OX=10090 GN=Rad54l2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR044574	Family	ATPase ARIP4-like	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45797	RAD54-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10876	RAD54L2; RAD54-like protein 2	EC:5.6.2.-	DNA repair and recombination proteins	ko03400	deepkoala