Gene detail

Detailed information of XP_028412709.1 in Dendronephthya gigantea

Genomic Location: NW_021163132.1:254815...261967
NR annotation: XP_028412709.1, DNA repair protein REV1-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028412709.1

ATGTCTTTAAAGGGAAAAAAACGAGAATTAGATGACTCTAATGATTGGGGAGGTTATATGCAAGCAAAAATTCGCAAGTTGGATAAACAATTTGATTTTATTAAAACTCAAAAAAATGATAACAGTTCTCTAAATGGTCTTTTTAAGAATGTTGTGATATTTGTCAATGGATATACAGAACCCAGTTCTGATGAACTGAAACAGTTAATGAAGAGATATGGTGGTGGCTTTCAACATTACTATTCTAGATCAAAGTGTACTCATATTATTGCTACTAACCTACCAAACAGCAAAATAAAGGAACTAAGAGGTGAAAAGGTTGTTCATCCTGACTGGATATTGGACAGTATTAAAGCTAAAAAATTACTAGCCTATCATAAATATCTTCTATATGGAGCTGGAAAGGATTATGGAGAAATTTTAAGCAAGTTCGATAAACCTTTGCCCCATTCAGTATGTTCAGTTGCACATGAGAATCATGCAAGTGTAACTGACACAATAACTTCAGACAGTCGTGAGAAGAATGAAGAATCAGAATCTAGTGTTTCTGGTTTATATCAGGTGGACAGTAAACAAACTACTTCCAATGAGAATTCTGATGTGCTCAGATCAAGTCTGAAAAGTGATGATAAATCATTGCTGGAATATGCCGTGGAAAGCAAGGAAAAGTGTTATCAAAGTTCTTCTGGTTTAGTTAATGATAAGAAGACAGCACAACGTAATTTAAAGAAGGGATCCATTCCTAAAGCTGGAGATGCCAACTTTGTCACAGATTACTACACTAATTCTCGCTTGCATTATCTTTCCACATGGGGCGTCGAATTTCGGGATTTTATTAACAGTTTGATCCAAACAACGGAGTTAAAGACTCGTAAAAAATCACTACCAAAAACAAGTTTAGAAAAACGTGTTATAATGCACATTGATATGGATTCATTCTTTGTATCTGTTGCTTTACGAACCAGGCCAGAGCTACGAGGAAAGCCTGTCGCTGTTTGCCATTCTGGTAGGAGTAATGATCCAGATAACTCTCATTCCTCATCGACGTATTCTTCAACTTCCGAAATTGCATCATGTAGTTATGAAGCAAGAGCTGTTGGTGTGAAAAACGGCATGTGGTTAGGAAATGCTCGAAAGTTGTGTCCAAATCTTATCTGTGTTCCATATCAATTTGAAGATTATCGTCAAGTTTCACAACAGTTTTATGAAATTCTTGCTAGCCATACTCATGAAATACAGGCTGTAAGTTGCGACGAGGCTTTTGTTGATCTCACAAATTACATTGAATCAGAATGTCTCCCAGTAATGAAAGTTGTGCAGAATATTCGTGAGGAAATAAAGAAGAAAACCAACTGTCCAGCGTCCGCTGGTCTTGCCTCTAATATATTGCTGGCTCGAATGTCTACTAAAGTAGCAAAACCCAACGGGCAGTTTCATTTACAAGATAATGATATTGCTGAGTTTATTGGTAAGCAGGAAGTTGCGGATCTACCAGGTGTTGGACACGCTCTTAATAAGAAGTTAAAATATCTAAATGTCATCACTTGTACTGAACTACAAAGTATTACCATGTCTGTCTTGCGACGTGAGTTTGGGCAAAAAACGGGGGAGATGCTTTATAAATATTCCCGGGGCCAAGACGACCGACAGCTGAAAGTTGAGCGTGAAAGAAAATCAGTTTCTGCAGAAATCAATTACGCAATCAGATTTTTAGAGGAGTCTGAACCAGAAAAATTCATCCATGATTTGTCAAACGAGGTTCAGAGAAGATTGAAATCAGCTGGTTTAAAAGGAAAGCAAGTAACAATAAAATTACGCGTACGGCAAAAAGATGCTCCTGTTAACCCAACAAAATTTATGGGCTGCGGCCGATGCGACAATATATCGCGATCAACAAATTTGAATTACTTCACTGACGATGAATCTCTTATCGCAAGAGAATGCATATCGATGTTAAAAACTCTAGCTCTGTCTGTTTCTGATATTCGCGGAATGGGGATTCAAATATGCAAACTTTCTGACGATGTTAGGAAACAATCCACAATGCCCAAAACATTGCATTGCTTTATGAATCCTAGGAAAGAGTCTTCTTCTAGGAATGAAACAAGGACGGGGACGAATATGACTTCAGACAAAAATGATAATACTCTTGATTCAGCTCTCGAAAGTGGTTTTGAACAAAAAGAGAGTTTGAACACGCCGCAACAAACTCCGTGTGAAGAGATTCAGTGTGAGAGAGAAACGTTTGAAGAATTCAGGTTAAAATTGAGTGATAATGAAGATGAATGTGAACAACACGAACTAAATAAATTACCATTGTTACCTGGCTTACCAGTATTCTCACCAAAACGCGTCTCATCATCAAAAAGGAAATCTTCCTTGCCTCAAGCCACTTCGCGGTCAAAATGCTCTGCCAATCTTAGCAAACGTTCGCCTAATAAATCTCCTTTTAAATCACTAAAAAAATCCCCCGAAAAAAGCGGTTTTCAGAGCTTCAAAGAAAGTGGTGTAATTGGTTCATTAGCTTTGCCATCGCCTTCACAAATTGATCCAGCCGTTTTTGCCGCTCTGCCGGAAGAGATAAAGAAGGATATCCAGACTTTTTACCAACAACGAAACCAAAAATTTGAGATGAATGCTGCTGAAGAGGTGCCTTTTAAAACCCAAGATGCACCTGAAGAAACTAGATATTTACCAAATATTCTAACTAAAAATGCTAAACGAGATCAAAATACTGCCGGAAGAAACATAAAGAAATCAAAAGTCAAGCATAAAAACATTAAACGTTTTGCCTCGAAGACGTCGAATAGAGAAGAAAGTAGCTGTCAGTTTGATGCCAGTGTTCTTGAGGCCTTGCCAGAGTGTATCAGAGACGAGCTCCATTTAGCTTATCAACAACAAAGGAAACATGATGAAAAAGCGGAGAAAAAGAACGGCAAATTAACAAAGAATGATGCGGCTATATTCGTATGTACTGAGCCAAAAGACGACACGATTAATACACCAATTTTGCTAACAACGAAAGTGAAGCTTGCTGGTGCTGAGTCTCTCTCAGACGTTAAGAAAATGTTAAAGCTGTGGACGAATGATGCAAAAGATCCGTTAGAGGAAGATTTGAGTGTATTTGTGGAGTATTTGCGTAATCTTATCGCTGAAAAAGATCTAGAGAGAACGTGGCTAGTCTTAAAATTTTATCGCAGATTGATGATTACGAAAAAAGCGTGGCAGGCTTCGTTTAATAGAGGATTAGATAATATTCAGAATATTTTGAAAGAAACTTATGATGGACATTTAGCAATTAATTATTTTATGTAA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q4KWZ7	DNA repair protein REV1 OS=Gallus gallus OX=9031 GN=REV1 PE=2 SV=1
Q920Q2	DNA repair protein REV1 OS=Mus musculus OX=10090 GN=Rev1 PE=1 SV=1
Q5R4N7	DNA repair protein REV1 OS=Pongo abelii OX=9601 GN=REV1 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11799	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan
PF00817	IMS	impB/mucB/samB family	Family	Interproscan
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF16727	REV1_C	DNA repair protein REV1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017961	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR001126	Domain	UmuC domain	Interproscan
IPR001357	Domain	BRCT domain	Interproscan
IPR038401	Homologous_superfamily	Rev1, C-terminal domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR012112	Family	DNA repair protein Rev1	Interproscan
IPR036775	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR031991	Domain	DNA repair protein Rev1, C-terminal	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45990	DNA REPAIR PROTEIN REV1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0017125	Molecular Function	deoxycytidyl transferase activity	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan
GO:0070987	Biological Process	error-free translesion synthesis	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03515	REV1; DNA repair protein REV1	EC:2.7.7.-	DNA repair and recombination proteins	ko03400	deepkoala