Gene detail

Detailed information of XP_028413066.1 in Dendronephthya gigantea

Genomic Location: NW_021163137.1:527523...548182
NR annotation: XP_028413064.1, uncharacterized protein LOC114535927 isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028413066.1

ATGTTTCTCAAACTACAACAAGTATTGAAGTATGGATTTTTATATATCTTGCTGTTTGCTTCAACTACAATTAAATCATGCCCAATGGTATTGAAGGAGGGATGGAAACAACTGTCTGTAGTCGAGCGCGCAAGAAGAGCTAATGTGGTAGCAGTTGGGAAGTCAGTCACGATCCTCACCGATAACTCTCGGAATCGCACTTGGAAAATTGGAGGATTTTATTTTTTGGATGTACTCAAAGGAAAACAAATAACAGAAAAAATCTATAAAAAATACAACGATTCGGTATTTTATGTTTTGGGTTTCGGCAGCTCAGCCAGATGTCTTGCTGATATCGAGAAATATAAAACATACTTGTTATTTCTTACCTTCGTGCCAGAAACTACGTCGTTGGTTGCTAAATACGAAACAGCCTTTTCCGCAACAGCCGAAGCAACTATTGAAAATCAAGATAAAATATTAGCTTCACTGGGTTGGGGGCCCTGGTCAGACTGGTCCTCGTGCTCAGCCTCTTGCTCGGGGGGTTGGGATAGAAGAACAAGGACGTGCAGAAAAAGAAGATGTGAGGGTTCCAAAATCTTACGACGAGCCTGTAATAACTACGAATGTGATGGAGCCACGAACGTATTGGAACACTTCATAGAGCGTCGAAAAACTCGCAGTATTCCAACACCTCCCATGCATGAAGATGCTTTAAAGATCAACAGTTTGAGGAATCTCTCTGTACCGACACATCAAATATTCTGGGAGCCATTTCCACGACATTTTACTATGTTTGCTGCTGCAAAGTATGTCAATTATACTGGGGGATATATGATTAGTTTCATTGATGCCAGTGATAGACTGCAGATTGGTATCAAAGTGAGTAGAACCTCAGTTGCACTGGAATATTCCCAGGCTGGAAGAAATAATCAATTCATAGCGTTCAACGTGGAAGTCGTAGACAGAAAATGGCATCGGTTTGCTTTCAGCGTTGGAGAAGGTCTAGTTTCGTTCTATTTAGATTGTGAAATGATAGGAACTCGCGAAATTGCACAAAATGGCCTATCTCGTGTTGATCGTTCAGGAAATGTATATCTCAATGCAAAACCCGAGCCTCCTCAGAGACGAGAGGAAAATATCGAGTTTTATATCGAAGAGCTTACTTTGTTCAATGCGAGCGCTGGTCAACAACAATGCAAGGATGATAATATATTTACATCAACTGCCCAGGAGCCGTTTTCAGAGGGATCAGGTGCTGGGCCACCAGAGTTGGAGTACACGTGGACAACATGGACAGCTTGTAGCAAAACATGCGGAACGGACGGAGTTCGACGTCGTATAAAGATGTGTTCAAGGAAATCCAGGGAGGAAAGACCAGAAGAATGCCAACAAATATTGCAACTATCTGAAGAACAATCTTGCAATAATATTCCTTGTCCTGGGAAGTGTCGACAACGTTGTATAAATGGAATATGTGCGGCGAAAAACAAGTGCAAATGCAAAAAAAATTATTACGGCCCTAATTGTCGTTATAAGAGAGCTTCACTCTGTAAACCAGCCTGCAGTAATGGTGCTGAATGTAGCAAAGGAATTTGTAAATGTCGACAAGGATTTTTCGGGAAAAGTTGTGAAAAAGCAAAGTGCTCTCCAATGTGTCAACAAGGGGGTGTTTGTACAAAAGCTGGAGTGTGCAAATGTCTACCTGGATTAAAACCCCCACTTTGTAAATCTGTGTGTAGACCATCATGTATGAACAAAGGCATTTGTTTTATGCGAAATCGATGTCATTGCAGAAGGGGATATTTTGGCAGACGATGTCAATACGCTGTATGTAGGAAAGTGTGTTTGAACGGAGGAGTTTGTTATGACAACAATAAATGTAACTGTAAATCAGGATGGACAGGTGATACATGTAATGTTGCGATATGTCATCCAAAATGTCAAAATGGAGGGAGGTGTAGATTTCCTAACCGATGTTCCTGTCCGAACAAAACAAGTGGGACATATTGTCAAAATGTTGTAACATCAGTGCTCTGA

Transcript

Protein

Uniprot

Uniprot term	Description
P35441	Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR048287	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR050969	Family	Developmental Signaling Modulators	Interproscan
IPR008993	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14949	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan