Genomic Location: NW_021163151.1:128238...137393
NR annotation: XP_028413773.1, uncharacterized protein LOC114536617 [Dendronephthya gigantea]
Species Dendronephthya gigantea · all data for this species · gene families
| CDS |
| XP_028413773.1 |
| Protein |
| XP_028413773.1 |
| UniProt accession | Description |
|---|---|
| B8MV59 | Partially reducing polyketide synthase tpeA OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=tpeA PE=3 SV=1 |
| P9WEH6 | Highly reducing polyketide synthase ltbA OS=Aspergillus luteorubrus OX=2715282 GN=ltbA PE=1 SV=1 |
| A0A1B4XBH3 | Highly reducing polyketide synthase sdnO OS=Sordaria araneosa OX=573841 GN=sdnO PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000672 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16197 all species → | KAsynt_C_assoc | Ketoacyl-synthetase C-terminal extension | Family | Interproscan |
| PF02801 all species → | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain | Domain | Interproscan |
| PF02460 all species → | Patched | Patched family | Family | Interproscan |
| PF00109 all species → | ketoacyl-synt | Beta-ketoacyl synthase, N-terminal domain | Domain | Interproscan |
| PF00698 all species → | Acyl_transf_1 | Acyl transferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050091 all species → | Family | Polyketide and Nonribosomal Peptide Biosynthesis Enzymes | Interproscan |
| IPR032821 all species → | Domain | Polyketide synthase, C-terminal extension | Interproscan |
| IPR001227 all species → | Homologous_superfamily | Acyl transferase domain superfamily | Interproscan |
| IPR014031 all species → | Domain | Beta-ketoacyl synthase, C-terminal | Interproscan |
| IPR003392 all species → | Family | Protein patched/dispatched | Interproscan |
| IPR016039 all species → | Homologous_superfamily | Thiolase-like | Interproscan |
| IPR014030 all species → | Domain | Beta-ketoacyl synthase, N-terminal | Interproscan |
| IPR000731 all species → | Domain | Sterol-sensing domain | Interproscan |
| IPR018201 all species → | Active_site | Beta-ketoacyl synthase, active site | Interproscan |
| IPR014043 all species → | Domain | Acyl transferase | Interproscan |
| IPR020841 all species → | Domain | Polyketide synthase, beta-ketoacyl synthase domain | Interproscan |
| IPR016035 all species → | Homologous_superfamily | Acyl transferase/acyl hydrolase/lysophospholipase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43775 all species → | FATTY ACID SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004312 all species → | Molecular Function | fatty acid synthase activity | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016746 all species → | Molecular Function | acyltransferase activity | Interproscan |
| GO:0004315 all species → | Molecular Function | 3-oxoacyl-[acyl-carrier-protein] synthase activity | Interproscan |
XP_028413773.1.Genes whose expression across the transcriptome samples of Dendronephthya gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Dendronephthya gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
