Genomic Location: NW_021163174.1:158130...165296
NR annotation: XP_028414684.1, nuclear factor NF-kappa-B p105 subunit-like [Dendronephthya gigantea]
Species Dendronephthya gigantea · all data for this species · gene families
| CDS |
| XP_028414684.1 |
| Protein |
| XP_028414684.1 |
| UniProt accession | Description |
|---|---|
| Q63369 | Nuclear factor NF-kappa-B p105 subunit OS=Rattus norvegicus OX=10116 GN=Nfkb1 PE=1 SV=2 |
| P98150 | Nuclear factor NF-kappa-B p100 subunit OS=Gallus gallus OX=9031 GN=NFKB2 PE=1 SV=1 |
| P25799 | Nuclear factor NF-kappa-B p105 subunit OS=Mus musculus OX=10090 GN=Nfkb1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000719 (this species only) · gene tree & orthology |
| Transcription factor family | RHD · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16179 all species → | RHD_dimer | Rel homology dimerisation domain | Domain | Interproscan |
| PF00554 all species → | RHD_DNA_bind | Rel homology DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032397 all species → | Domain | Rel homology dimerisation domain | Interproscan |
| IPR033926 all species → | Domain | NFkappaB IPT domain | Interproscan |
| IPR000451 all species → | Family | NF-kappa-B/Dorsal | Interproscan |
| IPR008967 all species → | Homologous_superfamily | p53-like transcription factor, DNA-binding domain superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR002909 all species → | Domain | IPT domain | Interproscan |
| IPR030492 all species → | Conserved_site | Rel homology domain, conserved site | Interproscan |
| IPR011539 all species → | Domain | Rel homology domain, DNA-binding domain | Interproscan |
| IPR037059 all species → | Homologous_superfamily | Rel homology domain (RHD), DNA-binding domain superfamily | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24169 all species → | NUCLEAR FACTOR NF-KAPPA-B PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09254 | REL; c-Rel proto-oncogene protein | - | Transcription factors | ko03000 | deepkoala |
Genes whose expression across the transcriptome samples of Dendronephthya gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Dendronephthya gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
