Gene detail

Detailed information of XP_028415455.1 in Dendronephthya gigantea

Genomic Location: NW_021163195.1:334816...355430
NR annotation: XP_028415455.1, LOW QUALITY PROTEIN: glutamate synthase 1 [NADH], chloroplastic-like, partial [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028415455.1

GGAGCAAAGCCCGGTGAAGGTGGCGAACTTCCGGGTCACAAGGTCACACCAGAGATTGCAAAAACGCGATTGTCAACCTTGGGTGTGGCATTGATCAGCCCTCCACCACATCATGATATTTACTCCATTGAAGATCTTGCTGAGTTGATTTTCAATCTGAAATGCTCCAATCCCAAGTCAAGAATTAGCGTTAAGCTGGTGTCAGAGGTCGGTGTTGGTGTAATTGCCGCTGGTGTGGCTAAGGGTCACGCCGAACACATCGTGATTTCCGGCCACGACGGGGGGACTGGTGCTAGTTCGTGGACCGGCATCAAACACGCCGGATTGCCGTGGGAACTGGGTCTGAGTGAAACACATCAGACTTTGGTTTTGAATAATTTGCGGCGACGAGTTGTCTTGCAAACAGACGGACAATTGAGAACAGGCCGTGATGTGATCATTGCTGCCTTGCTTGGGGCGGACGAATTTGGCTTTTCCACCGCCCCATTGATCAGCCTTGGCTGTACGATGATGAGAAAATGTCATCTCAATACGTGCCCCGTTGGCATAGCAACACAGGATCCTGTTTTGCGAAAGAAATTTGATGGCAAACCAGAATACGTCATCAATTATTTCTTCATGATTGCTGAAGAGGTACGCGAATACATGGCTAAGCTGGGTTTTAAAACAATGAAGGAAATGATCGGGCAGACACAATGCATCAAGAATTCTGAAGATCCTTTGAACGAGAAAACTAAGCTTCTTGACTTCGGAAAGATTCTGCTTCCAGCTCATTCCTTGAGCGAAGGTGAACATTTTGGTGGAACTGAGGGACAGGAGTTTGGATTGGAAGATAGAATGGAGGATGAACTCATCGCAGCCGTTCACGATGTTCTTGAAGGGAAGCGAAAAAACGTTCTCATTGAATTCAATATTGGAAATCAAGATCGAAGTTTTGGAACAACAACAAGCTATCACATATCCAGAAAACTCCTCGACACTGGCCTACCTGAAGACACGGTTTTCGTGAAACTTAAAGGGTCTGCAGGTCAAAGTTTCGGGGCGTTCGTTTGTCGTGGTATTACTTTAGAGTTGGAAGGAGATGCAAATGACTATGTAGGAAAGGGTCTTTCTGGCGGGAAGATAATATTATATCCGAGCAAGAATTTGCCCCAGAATTTCAAAGCTGAAGACAATATCATTGCTGGGAATGTCTGTCTCTATGGCGCCACGTCTGGGAAGGCATATTTTCGTGGAGTGACTGCCGAACGCTTTTGTGTTCGCAATTCAGGCGCCATTGCTGTTTGTGAGGGGTGTGGTGACCATGGTTGTGAATACATGACGGGGGGAACGGTCGTTATTTTGGGACCGACTGGAAGAAATTTTGCGGCCGGAATGTCGGGAGGGATCGCTTACATTTTTGACCGGTCAGGTAAATTCCCAAGTCTTTGCAACACACAAAAAGTTGATCTTGATCCATTACAAGATGAAGATTATACCTCACTAAAACACATCATTCAGGATCACTTTCATTACACGCAATCTACCGTGGCAAAGACCTTGTTAGATAACTGGAGTGAGGCTGTTAAACTCTTCATCAAGGATTCGGTGAACGACATTGCTGATATTGAAGAAGCTGTTCCGAATGACAGTGATGAGAAAAACATTGATAAACAAAGAATTCACCGGAGAGTTTGCCCCGCGCCATGTGAGGGTGCCTGTGTGCTGAGCATCAATTCACAACCTGTTACGATCAAAAGTATCGAATGTCAAATCATTGATGTTGCTTTTGAAAAAGGATGGATGAAACCTCAGGTCGCCTCAATGAGAACAAACAAAACTGTTGCTATCATTGGAAGTGGTCCTGCTGGTCTAGCAGCTGCCGCTCAACTCAACAAGGCTGGTCACCTTGTCACGGTTTATGAAAAGAACGAGAAATGTGGCGGATTACTGATGTGAATTCCTTCAATGAAAATTGAGAAAGAGGTCGTTCAAAGACGTATCCATCTTCTGGCTGAGGAAGGGATAGGATATCCCAATACCGAAATCGGAGTCGATCTTTCCGGCCAGCAGCTGCTCGAGTCATATGACGCCATCCTTTTAGCGATTGGTTCAACCGTTCCACGTGACCTCCAGATTCCTGGTCGAGAACTTAAGGGCATACAGTTCGCTATGGATTTTCTGGAAAAAAATCAAAAGAAACAGCTTGGTCCTTACAGTGGTAACGTCACAGACGCACGTGATAAGAACGTGATCATCATTGGTGGAGGCGACACAGGTGTAGACTGTGTGGCCACCTGTGTGCGACAGAATGCAAGGACGATAACGACATTCGAATTGCTGAGCGAACCGCCTAAGAACAGAAAAGACGCAAATCCGTGGCCTCAATGGCCGCGCGTGTTCAGAATTGAATATGGGCACGAAGAGGTTGCAATCAAATACGGCAAAGATCCTCGGCATTATAACACCCTGAGCAAGGAATTCATCAATGACGAGAAAGGAAACGTCACCGGCATAAGAACAGTCAGAGTGGAATGGGTCAAGGACATCTCAGGCCGCTGGGCGATGGCTGAAATACCAAATTCTGAACATATTTTCAAAGCAGATCTGGTGATCATCGCCCTGGGGTTCACTGGACCAGGAAAAACTTTGGCGAAAGAACTTGGCCTCAAAATGGACATCAGATCAAATTTTGCAACAGAAAGGAATAATTTTAACACAAACGTCCCGAAGATTTTCGCCGCTGGAGACTGCAGATATGGCCAGTCCTTGGTCGTGACTGCGATAGCCGAAGGCAGACAGGCCGCGAGACAAATTGATTTGCATCTCATGGGAACGACCTCATTGGCTGGACCAGGTGGAGTAATTGTCAATCATGAATCACGTGTCAGCATAAGGTCAGAGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q0DG35	Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0555600 PE=2 SV=2
Q9LV03	Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2
Q03460	Glutamate synthase [NADH], amyloplastic OS=Medicago sativa OX=3879 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF01645	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF01493	GXGXG	GXGXG motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036485	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR002489	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR051394	Family	Glutamate Synthase	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR002932	Domain	Glutamate synthase domain	Interproscan
IPR023753	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR006005	Family	Glutamate synthase, NADH/NADPH, small subunit 1	Interproscan
IPR009051	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0016639	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan